CH ELM (R4)
1.0.0-trialuse - trial-use Switzerland flag

This page is part of the Observations of notifiable communicable infectious diseases (v1.0.0-trialuse: STU 1 Draft) based on FHIR R4. This is the current published version. For a full list of available versions, see the Directory of published versions

: CH ELM Lab Specimen Types - JSON Representation

Active as of 2023-09-13

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{
  "resourceType" : "ValueSet",
  "id" : "ch-elm-lab-specimen-types",
  "text" : {
    "status" : "generated",
    "div" : "<div xmlns=\"http://www.w3.org/1999/xhtml\">Placeholder</div>"
  },
  "url" : "http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-lab-specimen-types",
  "version" : "1.0.0-trialuse",
  "name" : "ChElmLabSpecimenTypes",
  "title" : "CH ELM Lab Specimen Types",
  "status" : "active",
  "experimental" : false,
  "date" : "2023-09-13T14:50:01+02:00",
  "publisher" : "Federal Office of Public Health FOPH",
  "contact" : [
    {
      "name" : "Federal Office of Public Health FOPH",
      "telecom" : [
        {
          "system" : "url",
          "value" : "https://www.bag.admin.ch/bag/en/home/das-bag/kontakt-standort.html"
        }
      ]
    }
  ],
  "description" : "This CH ELM value set includes the codes for the laboratory specimen.",
  "jurisdiction" : [
    {
      "coding" : [
        {
          "system" : "urn:iso:std:iso:3166",
          "code" : "CHE"
        }
      ]
    }
  ],
  "copyright" : "CC0-1.0",
  "compose" : {
    "include" : [
      {
        "system" : "http://snomed.info/sct",
        "concept" : [
          {
            "code" : "257261003",
            "display" : "Swab"
          },
          {
            "code" : "123038009",
            "display" : "Specimen"
          },
          {
            "code" : "258500001",
            "display" : "Nasopharyngeal swab"
          },
          {
            "code" : "461911000124106",
            "display" : "Oropharyngeal swab"
          },
          {
            "code" : "258529004",
            "display" : "Throat swab"
          },
          {
            "code" : "258607008",
            "display" : "Bronchoalveolar lavage fluid"
          },
          {
            "code" : "119339001",
            "display" : "Faeces specimen"
          },
          {
            "code" : "119334006",
            "display" : "Sputum specimen"
          },
          {
            "code" : "119297000",
            "display" : "Blood specimen"
          },
          {
            "code" : "119342007",
            "display" : "Saliva specimen"
          },
          {
            "code" : "447154002",
            "display" : "Specimen from nose"
          },
          {
            "code" : "119371008",
            "display" : "Specimen from abscess"
          },
          {
            "code" : "447955000",
            "display" : "Specimen from rectum"
          },
          {
            "code" : "168139001",
            "display" : "Peritoneal fluid"
          },
          {
            "code" : "119399004",
            "display" : "Specimen from eye"
          },
          {
            "code" : "119401005",
            "display" : "Specimen from conjunctiva"
          },
          {
            "code" : "258415003",
            "display" : "Biopsy specimen"
          },
          {
            "code" : "119395005",
            "display" : "Specimen from uterine cervix"
          },
          {
            "code" : "119344008",
            "display" : "Specimen from genital system"
          },
          {
            "code" : "258450006",
            "display" : "Cerebrospinal fluid specimen"
          },
          {
            "code" : "258589002",
            "display" : "Lymph node specimen"
          },
          {
            "code" : "258426009",
            "display" : "Placental membrane tissue specimen"
          },
          {
            "code" : "57711000052109",
            "display" : "Specimen obtained by puncture procedure"
          },
          {
            "code" : "119347001",
            "display" : "Seminal fluid"
          },
          {
            "code" : "122575003",
            "display" : "Urine specimen"
          },
          {
            "code" : "119394009",
            "display" : "Specimen from vagina"
          },
          {
            "code" : "119365002",
            "display" : "Specimen from wound"
          },
          {
            "code" : "119393003",
            "display" : "Specimen from urethra"
          },
          {
            "code" : "119364003",
            "display" : "Serum specimen"
          },
          {
            "code" : "309051001",
            "display" : "Body fluid specimen"
          },
          {
            "code" : "430304001",
            "display" : "Specimen from unspecified body site"
          },
          {
            "code" : "309132009",
            "display" : "Prostate biopsy specimen"
          },
          {
            "code" : "472904006",
            "display" : "Swab from abdomen"
          },
          {
            "code" : "258527002",
            "display" : "Anal swab"
          },
          {
            "code" : "445160003",
            "display" : "Swab of eye"
          },
          {
            "code" : "119300005",
            "display" : "Specimen from blood product"
          },
          {
            "code" : "119391001",
            "display" : "Specimen from bronchus"
          },
          {
            "code" : "258454002",
            "display" : "Dialysis fluid specimen"
          },
          {
            "code" : "122643008",
            "display" : "Tissue specimen from large intestine"
          },
          {
            "code" : "119323008",
            "display" : "Pus specimen"
          },
          {
            "code" : "119378002",
            "display" : "Endocardial specimen"
          },
          {
            "code" : "119373006",
            "display" : "Amniotic fluid specimen"
          },
          {
            "code" : "119341000",
            "display" : "Bile specimen"
          },
          {
            "code" : "119332005",
            "display" : "Synovial fluid specimen"
          },
          {
            "code" : "258508008",
            "display" : "Genital swab"
          },
          {
            "code" : "119376003",
            "display" : "Tissue specimen"
          },
          {
            "code" : "608969007",
            "display" : "Specimen from skin"
          },
          {
            "code" : "119398007",
            "display" : "Specimen from brain"
          },
          {
            "code" : "119303007",
            "display" : "Microbial isolate specimen"
          },
          {
            "code" : "430268003",
            "display" : "Specimen from bone"
          },
          {
            "code" : "445447003",
            "display" : "Specimen from trachea obtained by aspiration"
          },
          {
            "code" : "399492000",
            "display" : "Tissue specimen from lung"
          },
          {
            "code" : "258459007",
            "display" : "Gastric fluid sample"
          },
          {
            "code" : "119359002",
            "display" : "Bone marrow specimen"
          },
          {
            "code" : "122556008",
            "display" : "Cord blood specimen"
          },
          {
            "code" : "309165001",
            "display" : "Ear sample"
          },
          {
            "code" : "119343002",
            "display" : "Pancreatic fluid specimen"
          },
          {
            "code" : "119361006",
            "display" : "Plasma specimen"
          },
          {
            "code" : "122736005",
            "display" : "Tissue specimen from placenta"
          },
          {
            "code" : "418564007",
            "display" : "Pleural fluid specimen"
          },
          {
            "code" : "119386002",
            "display" : "Specimen from prostate"
          },
          {
            "code" : "119295008",
            "display" : "Specimen obtained by aspiration"
          },
          {
            "code" : "119389009",
            "display" : "Specimen from throat"
          },
          {
            "code" : "119396006",
            "display" : "Specimen from endometrium"
          },
          {
            "code" : "258465007",
            "display" : "Lacrimal fluid sample"
          },
          {
            "code" : "119369008",
            "display" : "Specimen from ulcer"
          },
          {
            "code" : "119324002",
            "display" : "Specimen of unknown material"
          },
          {
            "code" : "258520000",
            "display" : "Vaginal swab"
          },
          {
            "code" : "258580003",
            "display" : "Whole blood sample"
          },
          {
            "code" : "258531008",
            "display" : "Wound swab"
          },
          {
            "code" : "119368000",
            "display" : "Specimen from cyst"
          }
        ]
      }
    ]
  }
}