CH ELM (R4)
1.7.0 - release
CH ELM (R4)
1.7.0 - release
This page is part of the Observations of notifiable communicable infectious diseases (v1.7.0: Release) based on FHIR (HL7® FHIR® Standard) R4. This is the current published version in its permanent home (it will always be available at this URL). For a full list of available versions, see the Directory of published versions
| Active as of 2024-11-28 |
<ValueSet xmlns="http://hl7.org/fhir">
<id value="ch-elm-expecting-organism-specification"/>
<text>
<status value="generated"/>
<div xmlns="http://www.w3.org/1999/xhtml"><p class="res-header-id"><b>Generated Narrative: ValueSet ch-elm-expecting-organism-specification</b></p><a name="ch-elm-expecting-organism-specification"> </a><a name="hcch-elm-expecting-organism-specification"> </a><a name="ch-elm-expecting-organism-specification-en-US"> </a><ul><li>Include these codes as defined in <a href="http://loinc.org"><code>http://loinc.org</code></a><table class="none"><tr><td style="white-space:nowrap"><b>Code</b></td><td><b>Display</b></td><td><b><a href="ValueSet-ch-elm-results-completion-vs.html">CH ELM Expecting Organism Specification To Results Completion Vs</a></b></td></tr><tr><td><a href="https://loinc.org/100911-7/">100911-7</a></td><td>Campylobacter sp [Presence] in Stool by Organism specific culture</td><td><span title="RELATEDTO">?</span><a href="CodeSystem-ch-elm-results-completion-vs.html#ch-elm-results-completion-vs-http.58.47.47fhir.46ch.47ig.47ch-elm.47ValueSet.47ch-elm-results-camp-org">http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-camp-org</a></td></tr><tr><td><a href="https://loinc.org/101219-4/">101219-4</a></td><td>Legionella sp DNA [Presence] in Specimen by NAA with probe detection</td><td><span title="RELATEDTO">?</span><a href="CodeSystem-ch-elm-results-completion-vs.html#ch-elm-results-completion-vs-http.58.47.47fhir.46ch.47ig.47ch-elm.47ValueSet.47ch-elm-results-leg-org">http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-leg-org</a></td></tr><tr><td><a href="https://loinc.org/101427-3/">101427-3</a></td><td>Shigella sp DNA [Presence] in Stool by NAA with probe detection</td><td><span title="RELATEDTO">?</span><a href="CodeSystem-ch-elm-results-completion-vs.html#ch-elm-results-completion-vs-http.58.47.47fhir.46ch.47ig.47ch-elm.47ValueSet.47ch-elm-results-shi-org">http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-shi-org</a></td></tr><tr><td><a href="https://loinc.org/104376-9/">104376-9</a></td><td>Diphtheria toxin DNA [Presence] in Specimen by NAA with probe detection</td><td><span title="RELATEDTO">?</span><a href="CodeSystem-ch-elm-results-completion-vs.html#ch-elm-results-completion-vs-http.58.47.47fhir.46ch.47ig.47ch-elm.47ValueSet.47ch-elm-results-diph-org">http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-diph-org</a></td></tr><tr><td><a href="https://loinc.org/14357-8/">14357-8</a></td><td>Microscopic observation [Identifier] in Cerebral spinal fluid by Gram stain</td><td><span title="RELATEDTO">?</span><a href="CodeSystem-ch-elm-results-completion-vs.html#ch-elm-results-completion-vs-http.58.47.47fhir.46ch.47ig.47ch-elm.47ValueSet.47ch-elm-results-men-org">http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-men-org</a></td></tr><tr><td><a href="https://loinc.org/17563-8/">17563-8</a></td><td>Salmonella sp identified in Specimen by Organism specific culture</td><td><span title="RELATEDTO">?</span><a href="CodeSystem-ch-elm-results-completion-vs.html#ch-elm-results-completion-vs-http.58.47.47fhir.46ch.47ig.47ch-elm.47ValueSet.47ch-elm-results-sal-org">http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-sal-org</a></td></tr><tr><td><a href="https://loinc.org/22826-2/">22826-2</a></td><td>Influenza virus A identified in Specimen by Bioassay</td><td><span title="RELATEDTO">?</span><a href="CodeSystem-ch-elm-results-completion-vs.html#ch-elm-results-completion-vs-http.58.47.47fhir.46ch.47ig.47ch-elm.47ValueSet.47ch-elm-results-influenza-hxny-org">http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-influenza-hxny-org</a></td></tr><tr><td><a href="https://loinc.org/24102-6/">24102-6</a></td><td>Corynebacterium toxin [Presence] in Specimen by Immune diffusion (ID)</td><td><span title="RELATEDTO">?</span><a href="CodeSystem-ch-elm-results-completion-vs.html#ch-elm-results-completion-vs-http.58.47.47fhir.46ch.47ig.47ch-elm.47ValueSet.47ch-elm-results-diph-org">http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-diph-org</a></td></tr><tr><td><a href="https://loinc.org/32781-7/">32781-7</a></td><td>Legionella sp Ag [Presence] in Urine</td><td><span title="RELATEDTO">?</span><a href="CodeSystem-ch-elm-results-completion-vs.html#ch-elm-results-completion-vs-http.58.47.47fhir.46ch.47ig.47ch-elm.47ValueSet.47ch-elm-results-leg-org">http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-leg-org</a></td></tr><tr><td><a href="https://loinc.org/38353-9/">38353-9</a></td><td>Streptococcus sp identified in Specimen by Organism specific culture</td><td><span title="RELATEDTO">?</span><a href="CodeSystem-ch-elm-results-completion-vs.html#ch-elm-results-completion-vs-http.58.47.47fhir.46ch.47ig.47ch-elm.47ValueSet.47ch-elm-results-pneu-org">http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-pneu-org</a></td></tr><tr><td><a href="https://loinc.org/39025-2/">39025-2</a></td><td>Influenza virus A hemagglutinin cDNA [Identifier] in Specimen by Sequencing</td><td><span title="RELATEDTO">?</span><a href="CodeSystem-ch-elm-results-completion-vs.html#ch-elm-results-completion-vs-http.58.47.47fhir.46ch.47ig.47ch-elm.47ValueSet.47ch-elm-results-influenza-hxny-org">http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-influenza-hxny-org</a></td></tr><tr><td><a href="https://loinc.org/41625-5/">41625-5</a></td><td>Brucella sp DNA [Identifier] in Specimen by NAA with probe detection</td><td><span title="RELATEDTO">?</span><a href="CodeSystem-ch-elm-results-completion-vs.html#ch-elm-results-completion-vs-http.58.47.47fhir.46ch.47ig.47ch-elm.47ValueSet.47ch-elm-results-bru-org">http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-bru-org</a></td></tr><tr><td><a href="https://loinc.org/43389-6/">43389-6</a></td><td>Streptococcus sp identified in Isolate by Organism specific culture</td><td><span title="RELATEDTO">?</span><a href="CodeSystem-ch-elm-results-completion-vs.html#ch-elm-results-completion-vs-http.58.47.47fhir.46ch.47ig.47ch-elm.47ValueSet.47ch-elm-results-pneu-org">http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-pneu-org</a></td></tr><tr><td><a href="https://loinc.org/46454-5/">46454-5</a></td><td>Shigella sp [Presence] in Specimen by Organism specific culture</td><td><span title="RELATEDTO">?</span><a href="CodeSystem-ch-elm-results-completion-vs.html#ch-elm-results-completion-vs-http.58.47.47fhir.46ch.47ig.47ch-elm.47ValueSet.47ch-elm-results-shi-org">http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-shi-org</a></td></tr><tr><td><a href="https://loinc.org/46455-2/">46455-2</a></td><td>Shigella sp DNA [Presence] in Specimen by NAA with probe detection</td><td><span title="RELATEDTO">?</span><a href="CodeSystem-ch-elm-results-completion-vs.html#ch-elm-results-completion-vs-http.58.47.47fhir.46ch.47ig.47ch-elm.47ValueSet.47ch-elm-results-shi-org">http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-shi-org</a></td></tr><tr><td><a href="https://loinc.org/46732-4/">46732-4</a></td><td>Francisella tularensis subtype [Identifier] in Specimen by NAA with probe detection</td><td><span title="RELATEDTO">?</span><a href="CodeSystem-ch-elm-results-completion-vs.html#ch-elm-results-completion-vs-http.58.47.47fhir.46ch.47ig.47ch-elm.47ValueSet.47ch-elm-results-tul-org">http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-tul-org</a></td></tr><tr><td><a href="https://loinc.org/47085-6/">47085-6</a></td><td>Plasmodium sp DNA [Presence] in Blood by NAA with probe detection</td><td><span title="RELATEDTO">?</span><a href="CodeSystem-ch-elm-results-completion-vs.html#ch-elm-results-completion-vs-http.58.47.47fhir.46ch.47ig.47ch-elm.47ValueSet.47ch-elm-results-mal-org">http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-mal-org</a></td></tr><tr><td><a href="https://loinc.org/49612-5/">49612-5</a></td><td>Salmonella sp DNA [Presence] in Specimen by NAA with probe detection</td><td><span title="RELATEDTO">?</span><a href="CodeSystem-ch-elm-results-completion-vs.html#ch-elm-results-completion-vs-http.58.47.47fhir.46ch.47ig.47ch-elm.47ValueSet.47ch-elm-results-sal-org">http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-sal-org</a></td></tr><tr><td><a href="https://loinc.org/49614-1/">49614-1</a></td><td>Campylobacter sp DNA [Identifier] in Specimen by NAA with probe detection</td><td><span title="RELATEDTO">?</span><a href="CodeSystem-ch-elm-results-completion-vs.html#ch-elm-results-completion-vs-http.58.47.47fhir.46ch.47ig.47ch-elm.47ValueSet.47ch-elm-results-camp-org">http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-camp-org</a></td></tr><tr><td><a href="https://loinc.org/4992-4/">4992-4</a></td><td>Campylobacter sp rRNA [Presence] in Specimen by Probe</td><td><span title="RELATEDTO">?</span><a href="CodeSystem-ch-elm-results-completion-vs.html#ch-elm-results-completion-vs-http.58.47.47fhir.46ch.47ig.47ch-elm.47ValueSet.47ch-elm-results-camp-org">http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-camp-org</a></td></tr><tr><td><a href="https://loinc.org/50687-3/">50687-3</a></td><td>Plasmodium sp Ag [Presence] in Blood</td><td><span title="RELATEDTO">?</span><a href="CodeSystem-ch-elm-results-completion-vs.html#ch-elm-results-completion-vs-http.58.47.47fhir.46ch.47ig.47ch-elm.47ValueSet.47ch-elm-results-mal-org">http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-mal-org</a></td></tr><tr><td><a href="https://loinc.org/50697-2/">50697-2</a></td><td>Influenza virus A Ag [Identifier] in Isolate</td><td><span title="RELATEDTO">?</span><a href="CodeSystem-ch-elm-results-completion-vs.html#ch-elm-results-completion-vs-http.58.47.47fhir.46ch.47ig.47ch-elm.47ValueSet.47ch-elm-results-influenza-hxny-org">http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-influenza-hxny-org</a></td></tr><tr><td><a href="https://loinc.org/51587-4/">51587-4</a></td><td>Plasmodium sp [Presence] in Blood by Light microscopy</td><td><span title="RELATEDTO">?</span><a href="CodeSystem-ch-elm-results-completion-vs.html#ch-elm-results-completion-vs-http.58.47.47fhir.46ch.47ig.47ch-elm.47ValueSet.47ch-elm-results-mal-org">http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-mal-org</a></td></tr><tr><td><a href="https://loinc.org/552-0/">552-0</a></td><td>Brucella sp identified in Specimen by Organism specific culture</td><td><span title="RELATEDTO">?</span><a href="CodeSystem-ch-elm-results-completion-vs.html#ch-elm-results-completion-vs-http.58.47.47fhir.46ch.47ig.47ch-elm.47ValueSet.47ch-elm-results-bru-org">http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-bru-org</a></td></tr><tr><td><a href="https://loinc.org/58473-0/">58473-0</a></td><td>Haemophilus influenzae serotype DNA [Identifier] in Specimen by NAA with probe detection</td><td><span title="RELATEDTO">?</span><a href="CodeSystem-ch-elm-results-completion-vs.html#ch-elm-results-completion-vs-http.58.47.47fhir.46ch.47ig.47ch-elm.47ValueSet.47ch-elm-results-haem-org">http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-haem-org</a></td></tr><tr><td><a href="https://loinc.org/589-2/">589-2</a></td><td>Legionella sp identified in Bronchial specimen by Organism specific culture</td><td><span title="RELATEDTO">?</span><a href="CodeSystem-ch-elm-results-completion-vs.html#ch-elm-results-completion-vs-http.58.47.47fhir.46ch.47ig.47ch-elm.47ValueSet.47ch-elm-results-leg-org">http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-leg-org</a></td></tr><tr><td><a href="https://loinc.org/590-0/">590-0</a></td><td>Legionella sp identified in Sputum by Organism specific culture</td><td><span title="RELATEDTO">?</span><a href="CodeSystem-ch-elm-results-completion-vs.html#ch-elm-results-completion-vs-http.58.47.47fhir.46ch.47ig.47ch-elm.47ValueSet.47ch-elm-results-leg-org">http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-leg-org</a></td></tr><tr><td><a href="https://loinc.org/593-4/">593-4</a></td><td>Legionella sp identified in Specimen by Organism specific culture</td><td><span title="RELATEDTO">?</span><a href="CodeSystem-ch-elm-results-completion-vs.html#ch-elm-results-completion-vs-http.58.47.47fhir.46ch.47ig.47ch-elm.47ValueSet.47ch-elm-results-leg-org">http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-leg-org</a></td></tr><tr><td><a href="https://loinc.org/59423-4/">59423-4</a></td><td>Influenza virus A hemagglutinin type RNA [Identifier] in Specimen by NAA with probe detection</td><td><span title="RELATEDTO">?</span><a href="CodeSystem-ch-elm-results-completion-vs.html#ch-elm-results-completion-vs-http.58.47.47fhir.46ch.47ig.47ch-elm.47ValueSet.47ch-elm-results-influenza-hxny-org">http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-influenza-hxny-org</a></td></tr><tr><td><a href="https://loinc.org/60422-3/">60422-3</a></td><td>Measles virus genotype [Identifier] in Specimen by NAA with probe detection</td><td><span title="RELATEDTO">?</span><a href="CodeSystem-ch-elm-results-completion-vs.html#ch-elm-results-completion-vs-http.58.47.47fhir.46ch.47ig.47ch-elm.47ValueSet.47ch-elm-results-mea-org">http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-mea-org</a></td></tr><tr><td><a href="https://loinc.org/65756-9/">65756-9</a></td><td>Salmonella sp serovar [Type] in Isolate</td><td><span title="RELATEDTO">?</span><a href="CodeSystem-ch-elm-results-completion-vs.html#ch-elm-results-completion-vs-http.58.47.47fhir.46ch.47ig.47ch-elm.47ValueSet.47ch-elm-results-sal-org-complete">http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-sal-org-complete</a></td></tr><tr><td><a href="https://loinc.org/6578-9/">6578-9</a></td><td>Vibrio sp identified in Blood by Organism specific culture</td><td><span title="RELATEDTO">?</span><a href="CodeSystem-ch-elm-results-completion-vs.html#ch-elm-results-completion-vs-http.58.47.47fhir.46ch.47ig.47ch-elm.47ValueSet.47ch-elm-results-chol-org">http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-chol-org</a></td></tr><tr><td><a href="https://loinc.org/6579-7/">6579-7</a></td><td>Vibrio sp identified in Stool by Organism specific culture</td><td><span title="RELATEDTO">?</span><a href="CodeSystem-ch-elm-results-completion-vs.html#ch-elm-results-completion-vs-http.58.47.47fhir.46ch.47ig.47ch-elm.47ValueSet.47ch-elm-results-chol-org">http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-chol-org</a></td></tr><tr><td><a href="https://loinc.org/6581-3/">6581-3</a></td><td>Vibrio sp identified in Specimen by Organism specific culture</td><td><span title="RELATEDTO">?</span><a href="CodeSystem-ch-elm-results-completion-vs.html#ch-elm-results-completion-vs-http.58.47.47fhir.46ch.47ig.47ch-elm.47ValueSet.47ch-elm-results-chol-org">http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-chol-org</a></td></tr><tr><td><a href="https://loinc.org/6584-7/">6584-7</a></td><td>Virus identified in Specimen by Culture</td><td><span title="RELATEDTO">?</span><a href="CodeSystem-ch-elm-results-completion-vs.html#ch-elm-results-completion-vs-http.58.47.47fhir.46ch.47ig.47ch-elm.47ValueSet.47ch-elm-results-virus-cult-org">http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-virus-cult-org</a></td></tr><tr><td><a href="https://loinc.org/6600-1/">6600-1</a></td><td>Haemophilus sp identified in Specimen by Organism specific culture</td><td><span title="RELATEDTO">?</span><a href="CodeSystem-ch-elm-results-completion-vs.html#ch-elm-results-completion-vs-http.58.47.47fhir.46ch.47ig.47ch-elm.47ValueSet.47ch-elm-results-haem-org">http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-haem-org</a></td></tr><tr><td><a href="https://loinc.org/6604-3/">6604-3</a></td><td>Influenza virus identified in Specimen by Organism specific culture</td><td><span title="RELATEDTO">?</span><a href="CodeSystem-ch-elm-results-completion-vs.html#ch-elm-results-completion-vs-http.58.47.47fhir.46ch.47ig.47ch-elm.47ValueSet.47ch-elm-results-influenza-hxny-org">http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-influenza-hxny-org</a></td></tr><tr><td><a href="https://loinc.org/6609-2/">6609-2</a></td><td>Listeria sp identified in Specimen by Organism specific culture</td><td><span title="RELATEDTO">?</span><a href="CodeSystem-ch-elm-results-completion-vs.html#ch-elm-results-completion-vs-http.58.47.47fhir.46ch.47ig.47ch-elm.47ValueSet.47ch-elm-results-lis-org">http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-lis-org</a></td></tr><tr><td><a href="https://loinc.org/70569-9/">70569-9</a></td><td>Plasmodium sp Ag [Identifier] in Blood by Rapid immunoassay</td><td><span title="RELATEDTO">?</span><a href="CodeSystem-ch-elm-results-completion-vs.html#ch-elm-results-completion-vs-http.58.47.47fhir.46ch.47ig.47ch-elm.47ValueSet.47ch-elm-results-mal-org">http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-mal-org</a></td></tr><tr><td><a href="https://loinc.org/71429-5/">71429-5</a></td><td>Campylobacter sp DNA.diarrheagenic [Presence] in Stool by NAA with probe detection</td><td><span title="RELATEDTO">?</span><a href="CodeSystem-ch-elm-results-completion-vs.html#ch-elm-results-completion-vs-http.58.47.47fhir.46ch.47ig.47ch-elm.47ValueSet.47ch-elm-results-camp-diar-org">http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-camp-diar-org</a></td></tr><tr><td><a href="https://loinc.org/74037-3/">74037-3</a></td><td>Transmissible spongiform encephalopathy [Identifier] in Brain by Light microscopy</td><td><span title="RELATEDTO">?</span><a href="CodeSystem-ch-elm-results-completion-vs.html#ch-elm-results-completion-vs-http.58.47.47fhir.46ch.47ig.47ch-elm.47ValueSet.47ch-elm-results-cjd-org">http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-cjd-org</a></td></tr><tr><td><a href="https://loinc.org/75756-7/">75756-7</a></td><td>Bacteria identified in Isolate by MS.MALDI-TOF</td><td><span title="RELATEDTO">?</span><a href="CodeSystem-ch-elm-results-completion-vs.html#ch-elm-results-completion-vs-http.58.47.47fhir.46ch.47ig.47ch-elm.47ValueSet.47ch-elm-results-maldi-tof-org">http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-maldi-tof-org</a></td></tr><tr><td><a href="https://loinc.org/7899-8/">7899-8</a></td><td>Hantavirus RNA [Presence] in Serum by NAA with probe detection</td><td><span title="RELATEDTO">?</span><a href="CodeSystem-ch-elm-results-completion-vs.html#ch-elm-results-completion-vs-http.58.47.47fhir.46ch.47ig.47ch-elm.47ValueSet.47ch-elm-results-hanta-org">http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-hanta-org</a></td></tr><tr><td><a href="https://loinc.org/82300-5/">82300-5</a></td><td>Shigella sp [Presence] in Stool by Culture</td><td><span title="RELATEDTO">?</span><a href="CodeSystem-ch-elm-results-completion-vs.html#ch-elm-results-completion-vs-http.58.47.47fhir.46ch.47ig.47ch-elm.47ValueSet.47ch-elm-results-shi-org">http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-shi-org</a></td></tr><tr><td><a href="https://loinc.org/82301-3/">82301-3</a></td><td>Salmonella sp [Presence] in Stool by Culture</td><td><span title="RELATEDTO">?</span><a href="CodeSystem-ch-elm-results-completion-vs.html#ch-elm-results-completion-vs-http.58.47.47fhir.46ch.47ig.47ch-elm.47ValueSet.47ch-elm-results-sal-org">http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-sal-org</a></td></tr><tr><td><a href="https://loinc.org/85827-4/">85827-4</a></td><td>Carbapenem resistance bla OXA-48-like gene [Presence] by Molecular method</td><td><span title="RELATEDTO">?</span><a href="CodeSystem-ch-elm-results-completion-vs.html#ch-elm-results-completion-vs-http.58.47.47fhir.46ch.47ig.47ch-elm.47ValueSet.47ch-elm-results-cpe-org">http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-cpe-org</a></td></tr><tr><td><a href="https://loinc.org/86520-4/">86520-4</a></td><td>Hantavirus RNA [Presence] in Blood by NAA with probe detection</td><td><span title="RELATEDTO">?</span><a href="CodeSystem-ch-elm-results-completion-vs.html#ch-elm-results-completion-vs-http.58.47.47fhir.46ch.47ig.47ch-elm.47ValueSet.47ch-elm-results-hanta-org">http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-hanta-org</a></td></tr><tr><td><a href="https://loinc.org/88585-5/">88585-5</a></td><td>Legionella sp identified in Lower respiratory specimen by Organism specific culture</td><td><span title="RELATEDTO">?</span><a href="CodeSystem-ch-elm-results-completion-vs.html#ch-elm-results-completion-vs-http.58.47.47fhir.46ch.47ig.47ch-elm.47ValueSet.47ch-elm-results-leg-org">http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-leg-org</a></td></tr><tr><td><a href="https://loinc.org/88588-9/">88588-9</a></td><td>Legionella sp DNA [Identifier] in Lower respiratory specimen by NAA with probe detection</td><td><span title="RELATEDTO">?</span><a href="CodeSystem-ch-elm-results-completion-vs.html#ch-elm-results-completion-vs-http.58.47.47fhir.46ch.47ig.47ch-elm.47ValueSet.47ch-elm-results-leg-org">http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-leg-org</a></td></tr><tr><td><a href="https://loinc.org/90066-2/">90066-2</a></td><td>Corynebacterium sp identified in Isolate by Organism specific culture</td><td><span title="RELATEDTO">?</span><a href="CodeSystem-ch-elm-results-completion-vs.html#ch-elm-results-completion-vs-http.58.47.47fhir.46ch.47ig.47ch-elm.47ValueSet.47ch-elm-results-diph-org">http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-diph-org</a></td></tr><tr><td><a href="https://loinc.org/92786-3/">92786-3</a></td><td>Corynebacterium sp DNA [Presence] by NAA with probe detection in Positive blood culture</td><td><span title="RELATEDTO">?</span><a href="CodeSystem-ch-elm-results-completion-vs.html#ch-elm-results-completion-vs-http.58.47.47fhir.46ch.47ig.47ch-elm.47ValueSet.47ch-elm-results-diph-org">http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-diph-org</a></td></tr><tr><td><a href="https://loinc.org/93385-3/">93385-3</a></td><td>Salmonella sp DNA [Presence] by NAA with probe detection in Positive blood culture</td><td><span title="RELATEDTO">?</span><a href="CodeSystem-ch-elm-results-completion-vs.html#ch-elm-results-completion-vs-http.58.47.47fhir.46ch.47ig.47ch-elm.47ValueSet.47ch-elm-results-sal-org">http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-sal-org</a></td></tr><tr><td><a href="https://loinc.org/97313-1/">97313-1</a></td><td>Salmonella sp DNA [Presence] in Stool by NAA with probe detection</td><td><span title="RELATEDTO">?</span><a href="CodeSystem-ch-elm-results-completion-vs.html#ch-elm-results-completion-vs-http.58.47.47fhir.46ch.47ig.47ch-elm.47ValueSet.47ch-elm-results-sal-org">http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-sal-org</a></td></tr><tr><td><a href="https://loinc.org/97513-6/">97513-6</a></td><td>Campylobacter sp [Presence] in Specimen by Organism specific culture</td><td><span title="RELATEDTO">?</span><a href="CodeSystem-ch-elm-results-completion-vs.html#ch-elm-results-completion-vs-http.58.47.47fhir.46ch.47ig.47ch-elm.47ValueSet.47ch-elm-results-camp-org">http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-camp-org</a></td></tr></table></li></ul></div>
</text>
<url
value="http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-expecting-organism-specification"/>
<version value="1.7.0"/>
<name value="ChElmExpectingOrganismSpecification"/>
<title value="CH ELM Expecting Organism Specification"/>
<status value="active"/>
<experimental value="false"/>
<date value="2024-11-28T14:09:02+00:00"/>
<publisher value="Federal Office of Public Health FOPH"/>
<contact>
<name value="Federal Office of Public Health FOPH"/>
<telecom>
<system value="url"/>
<value
value="https://www.bag.admin.ch/bag/en/home/das-bag/kontakt-standort.html"/>
</telecom>
</contact>
<description
value="This CH ELM value set includes the leading codes for the laboratory test results, which have to be completed by another code for the expecting organism."/>
<jurisdiction>
<coding>
<system value="urn:iso:std:iso:3166"/>
<code value="CHE"/>
</coding>
</jurisdiction>
<copyright value="CC0-1.0"/>
<compose>
<include>
<system value="http://loinc.org"/>
<concept>
<code value="100911-7"/>
<display
value="Campylobacter sp [Presence] in Stool by Organism specific culture"/>
</concept>
<concept>
<code value="101219-4"/>
<display
value="Legionella sp DNA [Presence] in Specimen by NAA with probe detection"/>
</concept>
<concept>
<code value="101427-3"/>
<display
value="Shigella sp DNA [Presence] in Stool by NAA with probe detection"/>
</concept>
<concept>
<code value="104376-9"/>
<display
value="Diphtheria toxin DNA [Presence] in Specimen by NAA with probe detection"/>
</concept>
<concept>
<code value="14357-8"/>
<display
value="Microscopic observation [Identifier] in Cerebral spinal fluid by Gram stain"/>
</concept>
<concept>
<code value="17563-8"/>
<display
value="Salmonella sp identified in Specimen by Organism specific culture"/>
</concept>
<concept>
<code value="22826-2"/>
<display
value="Influenza virus A identified in Specimen by Bioassay"/>
</concept>
<concept>
<code value="24102-6"/>
<display
value="Corynebacterium toxin [Presence] in Specimen by Immune diffusion (ID)"/>
</concept>
<concept>
<code value="32781-7"/>
<display value="Legionella sp Ag [Presence] in Urine"/>
</concept>
<concept>
<code value="38353-9"/>
<display
value="Streptococcus sp identified in Specimen by Organism specific culture"/>
</concept>
<concept>
<code value="39025-2"/>
<display
value="Influenza virus A hemagglutinin cDNA [Identifier] in Specimen by Sequencing"/>
</concept>
<concept>
<code value="41625-5"/>
<display
value="Brucella sp DNA [Identifier] in Specimen by NAA with probe detection"/>
</concept>
<concept>
<code value="43389-6"/>
<display
value="Streptococcus sp identified in Isolate by Organism specific culture"/>
</concept>
<concept>
<code value="46454-5"/>
<display
value="Shigella sp [Presence] in Specimen by Organism specific culture"/>
</concept>
<concept>
<code value="46455-2"/>
<display
value="Shigella sp DNA [Presence] in Specimen by NAA with probe detection"/>
</concept>
<concept>
<code value="46732-4"/>
<display
value="Francisella tularensis subtype [Identifier] in Specimen by NAA with probe detection"/>
</concept>
<concept>
<code value="47085-6"/>
<display
value="Plasmodium sp DNA [Presence] in Blood by NAA with probe detection"/>
</concept>
<concept>
<code value="49612-5"/>
<display
value="Salmonella sp DNA [Presence] in Specimen by NAA with probe detection"/>
</concept>
<concept>
<code value="49614-1"/>
<display
value="Campylobacter sp DNA [Identifier] in Specimen by NAA with probe detection"/>
</concept>
<concept>
<code value="4992-4"/>
<display
value="Campylobacter sp rRNA [Presence] in Specimen by Probe"/>
</concept>
<concept>
<code value="50687-3"/>
<display value="Plasmodium sp Ag [Presence] in Blood"/>
</concept>
<concept>
<code value="50697-2"/>
<display value="Influenza virus A Ag [Identifier] in Isolate"/>
</concept>
<concept>
<code value="51587-4"/>
<display
value="Plasmodium sp [Presence] in Blood by Light microscopy"/>
</concept>
<concept>
<code value="552-0"/>
<display
value="Brucella sp identified in Specimen by Organism specific culture"/>
</concept>
<concept>
<code value="58473-0"/>
<display
value="Haemophilus influenzae serotype DNA [Identifier] in Specimen by NAA with probe detection"/>
</concept>
<concept>
<code value="589-2"/>
<display
value="Legionella sp identified in Bronchial specimen by Organism specific culture"/>
</concept>
<concept>
<code value="590-0"/>
<display
value="Legionella sp identified in Sputum by Organism specific culture"/>
</concept>
<concept>
<code value="593-4"/>
<display
value="Legionella sp identified in Specimen by Organism specific culture"/>
</concept>
<concept>
<code value="59423-4"/>
<display
value="Influenza virus A hemagglutinin type RNA [Identifier] in Specimen by NAA with probe detection"/>
</concept>
<concept>
<code value="60422-3"/>
<display
value="Measles virus genotype [Identifier] in Specimen by NAA with probe detection"/>
</concept>
<concept>
<code value="65756-9"/>
<display value="Salmonella sp serovar [Type] in Isolate"/>
</concept>
<concept>
<code value="6578-9"/>
<display
value="Vibrio sp identified in Blood by Organism specific culture"/>
</concept>
<concept>
<code value="6579-7"/>
<display
value="Vibrio sp identified in Stool by Organism specific culture"/>
</concept>
<concept>
<code value="6581-3"/>
<display
value="Vibrio sp identified in Specimen by Organism specific culture"/>
</concept>
<concept>
<code value="6584-7"/>
<display value="Virus identified in Specimen by Culture"/>
</concept>
<concept>
<code value="6600-1"/>
<display
value="Haemophilus sp identified in Specimen by Organism specific culture"/>
</concept>
<concept>
<code value="6604-3"/>
<display
value="Influenza virus identified in Specimen by Organism specific culture"/>
</concept>
<concept>
<code value="6609-2"/>
<display
value="Listeria sp identified in Specimen by Organism specific culture"/>
</concept>
<concept>
<code value="70569-9"/>
<display
value="Plasmodium sp Ag [Identifier] in Blood by Rapid immunoassay"/>
</concept>
<concept>
<code value="71429-5"/>
<display
value="Campylobacter sp DNA.diarrheagenic [Presence] in Stool by NAA with probe detection"/>
</concept>
<concept>
<code value="74037-3"/>
<display
value="Transmissible spongiform encephalopathy [Identifier] in Brain by Light microscopy"/>
</concept>
<concept>
<code value="75756-7"/>
<display value="Bacteria identified in Isolate by MS.MALDI-TOF"/>
</concept>
<concept>
<code value="7899-8"/>
<display
value="Hantavirus RNA [Presence] in Serum by NAA with probe detection"/>
</concept>
<concept>
<code value="82300-5"/>
<display value="Shigella sp [Presence] in Stool by Culture"/>
</concept>
<concept>
<code value="82301-3"/>
<display value="Salmonella sp [Presence] in Stool by Culture"/>
</concept>
<concept>
<code value="85827-4"/>
<display
value="Carbapenem resistance bla OXA-48-like gene [Presence] by Molecular method"/>
</concept>
<concept>
<code value="86520-4"/>
<display
value="Hantavirus RNA [Presence] in Blood by NAA with probe detection"/>
</concept>
<concept>
<code value="88585-5"/>
<display
value="Legionella sp identified in Lower respiratory specimen by Organism specific culture"/>
</concept>
<concept>
<code value="88588-9"/>
<display
value="Legionella sp DNA [Identifier] in Lower respiratory specimen by NAA with probe detection"/>
</concept>
<concept>
<code value="90066-2"/>
<display
value="Corynebacterium sp identified in Isolate by Organism specific culture"/>
</concept>
<concept>
<code value="92786-3"/>
<display
value="Corynebacterium sp DNA [Presence] by NAA with probe detection in Positive blood culture"/>
</concept>
<concept>
<code value="93385-3"/>
<display
value="Salmonella sp DNA [Presence] by NAA with probe detection in Positive blood culture"/>
</concept>
<concept>
<code value="97313-1"/>
<display
value="Salmonella sp DNA [Presence] in Stool by NAA with probe detection"/>
</concept>
<concept>
<code value="97513-6"/>
<display
value="Campylobacter sp [Presence] in Specimen by Organism specific culture"/>
</concept>
</include>
</compose>
</ValueSet>