CH ELM (R4)
1.7.0 - release
CH ELM (R4)
1.7.0 - release
This page is part of the Observations of notifiable communicable infectious diseases (v1.7.0: Release) based on FHIR (HL7® FHIR® Standard) R4. This is the current published version in its permanent home (it will always be available at this URL). For a full list of available versions, see the Directory of published versions
| Active as of 2024-11-28 |
{
"resourceType" : "ValueSet",
"id" : "ch-elm-expecting-organism-specification",
"text" : {
"status" : "generated",
"div" : "<div xmlns=\"http://www.w3.org/1999/xhtml\"><p class=\"res-header-id\"><b>Generated Narrative: ValueSet ch-elm-expecting-organism-specification</b></p><a name=\"ch-elm-expecting-organism-specification\"> </a><a name=\"hcch-elm-expecting-organism-specification\"> </a><a name=\"ch-elm-expecting-organism-specification-en-US\"> </a><ul><li>Include these codes as defined in <a href=\"http://loinc.org\"><code>http://loinc.org</code></a><table class=\"none\"><tr><td style=\"white-space:nowrap\"><b>Code</b></td><td><b>Display</b></td><td><b><a href=\"ValueSet-ch-elm-results-completion-vs.html\">CH ELM Expecting Organism Specification To Results Completion Vs</a></b></td></tr><tr><td><a href=\"https://loinc.org/100911-7/\">100911-7</a></td><td>Campylobacter sp [Presence] in Stool by Organism specific culture</td><td><span title=\"RELATEDTO\">?</span><a href=\"CodeSystem-ch-elm-results-completion-vs.html#ch-elm-results-completion-vs-http.58.47.47fhir.46ch.47ig.47ch-elm.47ValueSet.47ch-elm-results-camp-org\">http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-camp-org</a></td></tr><tr><td><a href=\"https://loinc.org/101219-4/\">101219-4</a></td><td>Legionella sp DNA [Presence] in Specimen by NAA with probe detection</td><td><span title=\"RELATEDTO\">?</span><a href=\"CodeSystem-ch-elm-results-completion-vs.html#ch-elm-results-completion-vs-http.58.47.47fhir.46ch.47ig.47ch-elm.47ValueSet.47ch-elm-results-leg-org\">http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-leg-org</a></td></tr><tr><td><a href=\"https://loinc.org/101427-3/\">101427-3</a></td><td>Shigella sp DNA [Presence] in Stool by NAA with probe detection</td><td><span title=\"RELATEDTO\">?</span><a href=\"CodeSystem-ch-elm-results-completion-vs.html#ch-elm-results-completion-vs-http.58.47.47fhir.46ch.47ig.47ch-elm.47ValueSet.47ch-elm-results-shi-org\">http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-shi-org</a></td></tr><tr><td><a href=\"https://loinc.org/104376-9/\">104376-9</a></td><td>Diphtheria toxin DNA [Presence] in Specimen by NAA with probe detection</td><td><span title=\"RELATEDTO\">?</span><a href=\"CodeSystem-ch-elm-results-completion-vs.html#ch-elm-results-completion-vs-http.58.47.47fhir.46ch.47ig.47ch-elm.47ValueSet.47ch-elm-results-diph-org\">http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-diph-org</a></td></tr><tr><td><a href=\"https://loinc.org/14357-8/\">14357-8</a></td><td>Microscopic observation [Identifier] in Cerebral spinal fluid by Gram stain</td><td><span title=\"RELATEDTO\">?</span><a href=\"CodeSystem-ch-elm-results-completion-vs.html#ch-elm-results-completion-vs-http.58.47.47fhir.46ch.47ig.47ch-elm.47ValueSet.47ch-elm-results-men-org\">http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-men-org</a></td></tr><tr><td><a href=\"https://loinc.org/17563-8/\">17563-8</a></td><td>Salmonella sp identified in Specimen by Organism specific culture</td><td><span title=\"RELATEDTO\">?</span><a href=\"CodeSystem-ch-elm-results-completion-vs.html#ch-elm-results-completion-vs-http.58.47.47fhir.46ch.47ig.47ch-elm.47ValueSet.47ch-elm-results-sal-org\">http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-sal-org</a></td></tr><tr><td><a href=\"https://loinc.org/22826-2/\">22826-2</a></td><td>Influenza virus A identified in Specimen by Bioassay</td><td><span title=\"RELATEDTO\">?</span><a href=\"CodeSystem-ch-elm-results-completion-vs.html#ch-elm-results-completion-vs-http.58.47.47fhir.46ch.47ig.47ch-elm.47ValueSet.47ch-elm-results-influenza-hxny-org\">http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-influenza-hxny-org</a></td></tr><tr><td><a href=\"https://loinc.org/24102-6/\">24102-6</a></td><td>Corynebacterium toxin [Presence] in Specimen by Immune diffusion (ID)</td><td><span title=\"RELATEDTO\">?</span><a href=\"CodeSystem-ch-elm-results-completion-vs.html#ch-elm-results-completion-vs-http.58.47.47fhir.46ch.47ig.47ch-elm.47ValueSet.47ch-elm-results-diph-org\">http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-diph-org</a></td></tr><tr><td><a href=\"https://loinc.org/32781-7/\">32781-7</a></td><td>Legionella sp Ag [Presence] in Urine</td><td><span title=\"RELATEDTO\">?</span><a href=\"CodeSystem-ch-elm-results-completion-vs.html#ch-elm-results-completion-vs-http.58.47.47fhir.46ch.47ig.47ch-elm.47ValueSet.47ch-elm-results-leg-org\">http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-leg-org</a></td></tr><tr><td><a href=\"https://loinc.org/38353-9/\">38353-9</a></td><td>Streptococcus sp identified in Specimen by Organism specific culture</td><td><span title=\"RELATEDTO\">?</span><a href=\"CodeSystem-ch-elm-results-completion-vs.html#ch-elm-results-completion-vs-http.58.47.47fhir.46ch.47ig.47ch-elm.47ValueSet.47ch-elm-results-pneu-org\">http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-pneu-org</a></td></tr><tr><td><a href=\"https://loinc.org/39025-2/\">39025-2</a></td><td>Influenza virus A hemagglutinin cDNA [Identifier] in Specimen by Sequencing</td><td><span title=\"RELATEDTO\">?</span><a href=\"CodeSystem-ch-elm-results-completion-vs.html#ch-elm-results-completion-vs-http.58.47.47fhir.46ch.47ig.47ch-elm.47ValueSet.47ch-elm-results-influenza-hxny-org\">http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-influenza-hxny-org</a></td></tr><tr><td><a href=\"https://loinc.org/41625-5/\">41625-5</a></td><td>Brucella sp DNA [Identifier] in Specimen by NAA with probe detection</td><td><span title=\"RELATEDTO\">?</span><a href=\"CodeSystem-ch-elm-results-completion-vs.html#ch-elm-results-completion-vs-http.58.47.47fhir.46ch.47ig.47ch-elm.47ValueSet.47ch-elm-results-bru-org\">http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-bru-org</a></td></tr><tr><td><a href=\"https://loinc.org/43389-6/\">43389-6</a></td><td>Streptococcus sp identified in Isolate by Organism specific culture</td><td><span title=\"RELATEDTO\">?</span><a href=\"CodeSystem-ch-elm-results-completion-vs.html#ch-elm-results-completion-vs-http.58.47.47fhir.46ch.47ig.47ch-elm.47ValueSet.47ch-elm-results-pneu-org\">http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-pneu-org</a></td></tr><tr><td><a href=\"https://loinc.org/46454-5/\">46454-5</a></td><td>Shigella sp [Presence] in Specimen by Organism specific culture</td><td><span title=\"RELATEDTO\">?</span><a href=\"CodeSystem-ch-elm-results-completion-vs.html#ch-elm-results-completion-vs-http.58.47.47fhir.46ch.47ig.47ch-elm.47ValueSet.47ch-elm-results-shi-org\">http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-shi-org</a></td></tr><tr><td><a href=\"https://loinc.org/46455-2/\">46455-2</a></td><td>Shigella sp DNA [Presence] in Specimen by NAA with probe detection</td><td><span title=\"RELATEDTO\">?</span><a href=\"CodeSystem-ch-elm-results-completion-vs.html#ch-elm-results-completion-vs-http.58.47.47fhir.46ch.47ig.47ch-elm.47ValueSet.47ch-elm-results-shi-org\">http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-shi-org</a></td></tr><tr><td><a href=\"https://loinc.org/46732-4/\">46732-4</a></td><td>Francisella tularensis subtype [Identifier] in Specimen by NAA with probe detection</td><td><span title=\"RELATEDTO\">?</span><a href=\"CodeSystem-ch-elm-results-completion-vs.html#ch-elm-results-completion-vs-http.58.47.47fhir.46ch.47ig.47ch-elm.47ValueSet.47ch-elm-results-tul-org\">http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-tul-org</a></td></tr><tr><td><a href=\"https://loinc.org/47085-6/\">47085-6</a></td><td>Plasmodium sp DNA [Presence] in Blood by NAA with probe detection</td><td><span title=\"RELATEDTO\">?</span><a href=\"CodeSystem-ch-elm-results-completion-vs.html#ch-elm-results-completion-vs-http.58.47.47fhir.46ch.47ig.47ch-elm.47ValueSet.47ch-elm-results-mal-org\">http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-mal-org</a></td></tr><tr><td><a href=\"https://loinc.org/49612-5/\">49612-5</a></td><td>Salmonella sp DNA [Presence] in Specimen by NAA with probe detection</td><td><span title=\"RELATEDTO\">?</span><a href=\"CodeSystem-ch-elm-results-completion-vs.html#ch-elm-results-completion-vs-http.58.47.47fhir.46ch.47ig.47ch-elm.47ValueSet.47ch-elm-results-sal-org\">http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-sal-org</a></td></tr><tr><td><a href=\"https://loinc.org/49614-1/\">49614-1</a></td><td>Campylobacter sp DNA [Identifier] in Specimen by NAA with probe detection</td><td><span title=\"RELATEDTO\">?</span><a href=\"CodeSystem-ch-elm-results-completion-vs.html#ch-elm-results-completion-vs-http.58.47.47fhir.46ch.47ig.47ch-elm.47ValueSet.47ch-elm-results-camp-org\">http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-camp-org</a></td></tr><tr><td><a href=\"https://loinc.org/4992-4/\">4992-4</a></td><td>Campylobacter sp rRNA [Presence] in Specimen by Probe</td><td><span title=\"RELATEDTO\">?</span><a href=\"CodeSystem-ch-elm-results-completion-vs.html#ch-elm-results-completion-vs-http.58.47.47fhir.46ch.47ig.47ch-elm.47ValueSet.47ch-elm-results-camp-org\">http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-camp-org</a></td></tr><tr><td><a href=\"https://loinc.org/50687-3/\">50687-3</a></td><td>Plasmodium sp Ag [Presence] in Blood</td><td><span title=\"RELATEDTO\">?</span><a href=\"CodeSystem-ch-elm-results-completion-vs.html#ch-elm-results-completion-vs-http.58.47.47fhir.46ch.47ig.47ch-elm.47ValueSet.47ch-elm-results-mal-org\">http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-mal-org</a></td></tr><tr><td><a href=\"https://loinc.org/50697-2/\">50697-2</a></td><td>Influenza virus A Ag [Identifier] in Isolate</td><td><span title=\"RELATEDTO\">?</span><a href=\"CodeSystem-ch-elm-results-completion-vs.html#ch-elm-results-completion-vs-http.58.47.47fhir.46ch.47ig.47ch-elm.47ValueSet.47ch-elm-results-influenza-hxny-org\">http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-influenza-hxny-org</a></td></tr><tr><td><a href=\"https://loinc.org/51587-4/\">51587-4</a></td><td>Plasmodium sp [Presence] in Blood by Light microscopy</td><td><span title=\"RELATEDTO\">?</span><a href=\"CodeSystem-ch-elm-results-completion-vs.html#ch-elm-results-completion-vs-http.58.47.47fhir.46ch.47ig.47ch-elm.47ValueSet.47ch-elm-results-mal-org\">http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-mal-org</a></td></tr><tr><td><a href=\"https://loinc.org/552-0/\">552-0</a></td><td>Brucella sp identified in Specimen by Organism specific culture</td><td><span title=\"RELATEDTO\">?</span><a href=\"CodeSystem-ch-elm-results-completion-vs.html#ch-elm-results-completion-vs-http.58.47.47fhir.46ch.47ig.47ch-elm.47ValueSet.47ch-elm-results-bru-org\">http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-bru-org</a></td></tr><tr><td><a href=\"https://loinc.org/58473-0/\">58473-0</a></td><td>Haemophilus influenzae serotype DNA [Identifier] in Specimen by NAA with probe detection</td><td><span title=\"RELATEDTO\">?</span><a href=\"CodeSystem-ch-elm-results-completion-vs.html#ch-elm-results-completion-vs-http.58.47.47fhir.46ch.47ig.47ch-elm.47ValueSet.47ch-elm-results-haem-org\">http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-haem-org</a></td></tr><tr><td><a href=\"https://loinc.org/589-2/\">589-2</a></td><td>Legionella sp identified in Bronchial specimen by Organism specific culture</td><td><span title=\"RELATEDTO\">?</span><a href=\"CodeSystem-ch-elm-results-completion-vs.html#ch-elm-results-completion-vs-http.58.47.47fhir.46ch.47ig.47ch-elm.47ValueSet.47ch-elm-results-leg-org\">http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-leg-org</a></td></tr><tr><td><a href=\"https://loinc.org/590-0/\">590-0</a></td><td>Legionella sp identified in Sputum by Organism specific culture</td><td><span title=\"RELATEDTO\">?</span><a href=\"CodeSystem-ch-elm-results-completion-vs.html#ch-elm-results-completion-vs-http.58.47.47fhir.46ch.47ig.47ch-elm.47ValueSet.47ch-elm-results-leg-org\">http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-leg-org</a></td></tr><tr><td><a href=\"https://loinc.org/593-4/\">593-4</a></td><td>Legionella sp identified in Specimen by Organism specific culture</td><td><span title=\"RELATEDTO\">?</span><a href=\"CodeSystem-ch-elm-results-completion-vs.html#ch-elm-results-completion-vs-http.58.47.47fhir.46ch.47ig.47ch-elm.47ValueSet.47ch-elm-results-leg-org\">http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-leg-org</a></td></tr><tr><td><a href=\"https://loinc.org/59423-4/\">59423-4</a></td><td>Influenza virus A hemagglutinin type RNA [Identifier] in Specimen by NAA with probe detection</td><td><span title=\"RELATEDTO\">?</span><a href=\"CodeSystem-ch-elm-results-completion-vs.html#ch-elm-results-completion-vs-http.58.47.47fhir.46ch.47ig.47ch-elm.47ValueSet.47ch-elm-results-influenza-hxny-org\">http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-influenza-hxny-org</a></td></tr><tr><td><a href=\"https://loinc.org/60422-3/\">60422-3</a></td><td>Measles virus genotype [Identifier] in Specimen by NAA with probe detection</td><td><span title=\"RELATEDTO\">?</span><a href=\"CodeSystem-ch-elm-results-completion-vs.html#ch-elm-results-completion-vs-http.58.47.47fhir.46ch.47ig.47ch-elm.47ValueSet.47ch-elm-results-mea-org\">http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-mea-org</a></td></tr><tr><td><a href=\"https://loinc.org/65756-9/\">65756-9</a></td><td>Salmonella sp serovar [Type] in Isolate</td><td><span title=\"RELATEDTO\">?</span><a href=\"CodeSystem-ch-elm-results-completion-vs.html#ch-elm-results-completion-vs-http.58.47.47fhir.46ch.47ig.47ch-elm.47ValueSet.47ch-elm-results-sal-org-complete\">http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-sal-org-complete</a></td></tr><tr><td><a href=\"https://loinc.org/6578-9/\">6578-9</a></td><td>Vibrio sp identified in Blood by Organism specific culture</td><td><span title=\"RELATEDTO\">?</span><a href=\"CodeSystem-ch-elm-results-completion-vs.html#ch-elm-results-completion-vs-http.58.47.47fhir.46ch.47ig.47ch-elm.47ValueSet.47ch-elm-results-chol-org\">http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-chol-org</a></td></tr><tr><td><a href=\"https://loinc.org/6579-7/\">6579-7</a></td><td>Vibrio sp identified in Stool by Organism specific culture</td><td><span title=\"RELATEDTO\">?</span><a href=\"CodeSystem-ch-elm-results-completion-vs.html#ch-elm-results-completion-vs-http.58.47.47fhir.46ch.47ig.47ch-elm.47ValueSet.47ch-elm-results-chol-org\">http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-chol-org</a></td></tr><tr><td><a href=\"https://loinc.org/6581-3/\">6581-3</a></td><td>Vibrio sp identified in Specimen by Organism specific culture</td><td><span title=\"RELATEDTO\">?</span><a href=\"CodeSystem-ch-elm-results-completion-vs.html#ch-elm-results-completion-vs-http.58.47.47fhir.46ch.47ig.47ch-elm.47ValueSet.47ch-elm-results-chol-org\">http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-chol-org</a></td></tr><tr><td><a href=\"https://loinc.org/6584-7/\">6584-7</a></td><td>Virus identified in Specimen by Culture</td><td><span title=\"RELATEDTO\">?</span><a href=\"CodeSystem-ch-elm-results-completion-vs.html#ch-elm-results-completion-vs-http.58.47.47fhir.46ch.47ig.47ch-elm.47ValueSet.47ch-elm-results-virus-cult-org\">http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-virus-cult-org</a></td></tr><tr><td><a href=\"https://loinc.org/6600-1/\">6600-1</a></td><td>Haemophilus sp identified in Specimen by Organism specific culture</td><td><span title=\"RELATEDTO\">?</span><a href=\"CodeSystem-ch-elm-results-completion-vs.html#ch-elm-results-completion-vs-http.58.47.47fhir.46ch.47ig.47ch-elm.47ValueSet.47ch-elm-results-haem-org\">http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-haem-org</a></td></tr><tr><td><a href=\"https://loinc.org/6604-3/\">6604-3</a></td><td>Influenza virus identified in Specimen by Organism specific culture</td><td><span title=\"RELATEDTO\">?</span><a href=\"CodeSystem-ch-elm-results-completion-vs.html#ch-elm-results-completion-vs-http.58.47.47fhir.46ch.47ig.47ch-elm.47ValueSet.47ch-elm-results-influenza-hxny-org\">http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-influenza-hxny-org</a></td></tr><tr><td><a href=\"https://loinc.org/6609-2/\">6609-2</a></td><td>Listeria sp identified in Specimen by Organism specific culture</td><td><span title=\"RELATEDTO\">?</span><a href=\"CodeSystem-ch-elm-results-completion-vs.html#ch-elm-results-completion-vs-http.58.47.47fhir.46ch.47ig.47ch-elm.47ValueSet.47ch-elm-results-lis-org\">http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-lis-org</a></td></tr><tr><td><a href=\"https://loinc.org/70569-9/\">70569-9</a></td><td>Plasmodium sp Ag [Identifier] in Blood by Rapid immunoassay</td><td><span title=\"RELATEDTO\">?</span><a href=\"CodeSystem-ch-elm-results-completion-vs.html#ch-elm-results-completion-vs-http.58.47.47fhir.46ch.47ig.47ch-elm.47ValueSet.47ch-elm-results-mal-org\">http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-mal-org</a></td></tr><tr><td><a href=\"https://loinc.org/71429-5/\">71429-5</a></td><td>Campylobacter sp DNA.diarrheagenic [Presence] in Stool by NAA with probe detection</td><td><span title=\"RELATEDTO\">?</span><a href=\"CodeSystem-ch-elm-results-completion-vs.html#ch-elm-results-completion-vs-http.58.47.47fhir.46ch.47ig.47ch-elm.47ValueSet.47ch-elm-results-camp-diar-org\">http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-camp-diar-org</a></td></tr><tr><td><a href=\"https://loinc.org/74037-3/\">74037-3</a></td><td>Transmissible spongiform encephalopathy [Identifier] in Brain by Light microscopy</td><td><span title=\"RELATEDTO\">?</span><a href=\"CodeSystem-ch-elm-results-completion-vs.html#ch-elm-results-completion-vs-http.58.47.47fhir.46ch.47ig.47ch-elm.47ValueSet.47ch-elm-results-cjd-org\">http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-cjd-org</a></td></tr><tr><td><a href=\"https://loinc.org/75756-7/\">75756-7</a></td><td>Bacteria identified in Isolate by MS.MALDI-TOF</td><td><span title=\"RELATEDTO\">?</span><a href=\"CodeSystem-ch-elm-results-completion-vs.html#ch-elm-results-completion-vs-http.58.47.47fhir.46ch.47ig.47ch-elm.47ValueSet.47ch-elm-results-maldi-tof-org\">http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-maldi-tof-org</a></td></tr><tr><td><a href=\"https://loinc.org/7899-8/\">7899-8</a></td><td>Hantavirus RNA [Presence] in Serum by NAA with probe detection</td><td><span title=\"RELATEDTO\">?</span><a href=\"CodeSystem-ch-elm-results-completion-vs.html#ch-elm-results-completion-vs-http.58.47.47fhir.46ch.47ig.47ch-elm.47ValueSet.47ch-elm-results-hanta-org\">http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-hanta-org</a></td></tr><tr><td><a href=\"https://loinc.org/82300-5/\">82300-5</a></td><td>Shigella sp [Presence] in Stool by Culture</td><td><span title=\"RELATEDTO\">?</span><a href=\"CodeSystem-ch-elm-results-completion-vs.html#ch-elm-results-completion-vs-http.58.47.47fhir.46ch.47ig.47ch-elm.47ValueSet.47ch-elm-results-shi-org\">http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-shi-org</a></td></tr><tr><td><a href=\"https://loinc.org/82301-3/\">82301-3</a></td><td>Salmonella sp [Presence] in Stool by Culture</td><td><span title=\"RELATEDTO\">?</span><a href=\"CodeSystem-ch-elm-results-completion-vs.html#ch-elm-results-completion-vs-http.58.47.47fhir.46ch.47ig.47ch-elm.47ValueSet.47ch-elm-results-sal-org\">http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-sal-org</a></td></tr><tr><td><a href=\"https://loinc.org/85827-4/\">85827-4</a></td><td>Carbapenem resistance bla OXA-48-like gene [Presence] by Molecular method</td><td><span title=\"RELATEDTO\">?</span><a href=\"CodeSystem-ch-elm-results-completion-vs.html#ch-elm-results-completion-vs-http.58.47.47fhir.46ch.47ig.47ch-elm.47ValueSet.47ch-elm-results-cpe-org\">http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-cpe-org</a></td></tr><tr><td><a href=\"https://loinc.org/86520-4/\">86520-4</a></td><td>Hantavirus RNA [Presence] in Blood by NAA with probe detection</td><td><span title=\"RELATEDTO\">?</span><a href=\"CodeSystem-ch-elm-results-completion-vs.html#ch-elm-results-completion-vs-http.58.47.47fhir.46ch.47ig.47ch-elm.47ValueSet.47ch-elm-results-hanta-org\">http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-hanta-org</a></td></tr><tr><td><a href=\"https://loinc.org/88585-5/\">88585-5</a></td><td>Legionella sp identified in Lower respiratory specimen by Organism specific culture</td><td><span title=\"RELATEDTO\">?</span><a href=\"CodeSystem-ch-elm-results-completion-vs.html#ch-elm-results-completion-vs-http.58.47.47fhir.46ch.47ig.47ch-elm.47ValueSet.47ch-elm-results-leg-org\">http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-leg-org</a></td></tr><tr><td><a href=\"https://loinc.org/88588-9/\">88588-9</a></td><td>Legionella sp DNA [Identifier] in Lower respiratory specimen by NAA with probe detection</td><td><span title=\"RELATEDTO\">?</span><a href=\"CodeSystem-ch-elm-results-completion-vs.html#ch-elm-results-completion-vs-http.58.47.47fhir.46ch.47ig.47ch-elm.47ValueSet.47ch-elm-results-leg-org\">http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-leg-org</a></td></tr><tr><td><a href=\"https://loinc.org/90066-2/\">90066-2</a></td><td>Corynebacterium sp identified in Isolate by Organism specific culture</td><td><span title=\"RELATEDTO\">?</span><a href=\"CodeSystem-ch-elm-results-completion-vs.html#ch-elm-results-completion-vs-http.58.47.47fhir.46ch.47ig.47ch-elm.47ValueSet.47ch-elm-results-diph-org\">http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-diph-org</a></td></tr><tr><td><a href=\"https://loinc.org/92786-3/\">92786-3</a></td><td>Corynebacterium sp DNA [Presence] by NAA with probe detection in Positive blood culture</td><td><span title=\"RELATEDTO\">?</span><a href=\"CodeSystem-ch-elm-results-completion-vs.html#ch-elm-results-completion-vs-http.58.47.47fhir.46ch.47ig.47ch-elm.47ValueSet.47ch-elm-results-diph-org\">http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-diph-org</a></td></tr><tr><td><a href=\"https://loinc.org/93385-3/\">93385-3</a></td><td>Salmonella sp DNA [Presence] by NAA with probe detection in Positive blood culture</td><td><span title=\"RELATEDTO\">?</span><a href=\"CodeSystem-ch-elm-results-completion-vs.html#ch-elm-results-completion-vs-http.58.47.47fhir.46ch.47ig.47ch-elm.47ValueSet.47ch-elm-results-sal-org\">http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-sal-org</a></td></tr><tr><td><a href=\"https://loinc.org/97313-1/\">97313-1</a></td><td>Salmonella sp DNA [Presence] in Stool by NAA with probe detection</td><td><span title=\"RELATEDTO\">?</span><a href=\"CodeSystem-ch-elm-results-completion-vs.html#ch-elm-results-completion-vs-http.58.47.47fhir.46ch.47ig.47ch-elm.47ValueSet.47ch-elm-results-sal-org\">http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-sal-org</a></td></tr><tr><td><a href=\"https://loinc.org/97513-6/\">97513-6</a></td><td>Campylobacter sp [Presence] in Specimen by Organism specific culture</td><td><span title=\"RELATEDTO\">?</span><a href=\"CodeSystem-ch-elm-results-completion-vs.html#ch-elm-results-completion-vs-http.58.47.47fhir.46ch.47ig.47ch-elm.47ValueSet.47ch-elm-results-camp-org\">http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-camp-org</a></td></tr></table></li></ul></div>"
},
"url" : "http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-expecting-organism-specification",
"version" : "1.7.0",
"name" : "ChElmExpectingOrganismSpecification",
"title" : "CH ELM Expecting Organism Specification",
"status" : "active",
"experimental" : false,
"date" : "2024-11-28T14:09:02+00:00",
"publisher" : "Federal Office of Public Health FOPH",
"contact" : [
{
"name" : "Federal Office of Public Health FOPH",
"telecom" : [
{
"system" : "url",
"value" : "https://www.bag.admin.ch/bag/en/home/das-bag/kontakt-standort.html"
}
]
}
],
"description" : "This CH ELM value set includes the leading codes for the laboratory test results, which have to be completed by another code for the expecting organism.",
"jurisdiction" : [
{
"coding" : [
{
"system" : "urn:iso:std:iso:3166",
"code" : "CHE"
}
]
}
],
"copyright" : "CC0-1.0",
"compose" : {
"include" : [
{
"system" : "http://loinc.org",
"concept" : [
{
"code" : "100911-7",
"display" : "Campylobacter sp [Presence] in Stool by Organism specific culture"
},
{
"code" : "101219-4",
"display" : "Legionella sp DNA [Presence] in Specimen by NAA with probe detection"
},
{
"code" : "101427-3",
"display" : "Shigella sp DNA [Presence] in Stool by NAA with probe detection"
},
{
"code" : "104376-9",
"display" : "Diphtheria toxin DNA [Presence] in Specimen by NAA with probe detection"
},
{
"code" : "14357-8",
"display" : "Microscopic observation [Identifier] in Cerebral spinal fluid by Gram stain"
},
{
"code" : "17563-8",
"display" : "Salmonella sp identified in Specimen by Organism specific culture"
},
{
"code" : "22826-2",
"display" : "Influenza virus A identified in Specimen by Bioassay"
},
{
"code" : "24102-6",
"display" : "Corynebacterium toxin [Presence] in Specimen by Immune diffusion (ID)"
},
{
"code" : "32781-7",
"display" : "Legionella sp Ag [Presence] in Urine"
},
{
"code" : "38353-9",
"display" : "Streptococcus sp identified in Specimen by Organism specific culture"
},
{
"code" : "39025-2",
"display" : "Influenza virus A hemagglutinin cDNA [Identifier] in Specimen by Sequencing"
},
{
"code" : "41625-5",
"display" : "Brucella sp DNA [Identifier] in Specimen by NAA with probe detection"
},
{
"code" : "43389-6",
"display" : "Streptococcus sp identified in Isolate by Organism specific culture"
},
{
"code" : "46454-5",
"display" : "Shigella sp [Presence] in Specimen by Organism specific culture"
},
{
"code" : "46455-2",
"display" : "Shigella sp DNA [Presence] in Specimen by NAA with probe detection"
},
{
"code" : "46732-4",
"display" : "Francisella tularensis subtype [Identifier] in Specimen by NAA with probe detection"
},
{
"code" : "47085-6",
"display" : "Plasmodium sp DNA [Presence] in Blood by NAA with probe detection"
},
{
"code" : "49612-5",
"display" : "Salmonella sp DNA [Presence] in Specimen by NAA with probe detection"
},
{
"code" : "49614-1",
"display" : "Campylobacter sp DNA [Identifier] in Specimen by NAA with probe detection"
},
{
"code" : "4992-4",
"display" : "Campylobacter sp rRNA [Presence] in Specimen by Probe"
},
{
"code" : "50687-3",
"display" : "Plasmodium sp Ag [Presence] in Blood"
},
{
"code" : "50697-2",
"display" : "Influenza virus A Ag [Identifier] in Isolate"
},
{
"code" : "51587-4",
"display" : "Plasmodium sp [Presence] in Blood by Light microscopy"
},
{
"code" : "552-0",
"display" : "Brucella sp identified in Specimen by Organism specific culture"
},
{
"code" : "58473-0",
"display" : "Haemophilus influenzae serotype DNA [Identifier] in Specimen by NAA with probe detection"
},
{
"code" : "589-2",
"display" : "Legionella sp identified in Bronchial specimen by Organism specific culture"
},
{
"code" : "590-0",
"display" : "Legionella sp identified in Sputum by Organism specific culture"
},
{
"code" : "593-4",
"display" : "Legionella sp identified in Specimen by Organism specific culture"
},
{
"code" : "59423-4",
"display" : "Influenza virus A hemagglutinin type RNA [Identifier] in Specimen by NAA with probe detection"
},
{
"code" : "60422-3",
"display" : "Measles virus genotype [Identifier] in Specimen by NAA with probe detection"
},
{
"code" : "65756-9",
"display" : "Salmonella sp serovar [Type] in Isolate"
},
{
"code" : "6578-9",
"display" : "Vibrio sp identified in Blood by Organism specific culture"
},
{
"code" : "6579-7",
"display" : "Vibrio sp identified in Stool by Organism specific culture"
},
{
"code" : "6581-3",
"display" : "Vibrio sp identified in Specimen by Organism specific culture"
},
{
"code" : "6584-7",
"display" : "Virus identified in Specimen by Culture"
},
{
"code" : "6600-1",
"display" : "Haemophilus sp identified in Specimen by Organism specific culture"
},
{
"code" : "6604-3",
"display" : "Influenza virus identified in Specimen by Organism specific culture"
},
{
"code" : "6609-2",
"display" : "Listeria sp identified in Specimen by Organism specific culture"
},
{
"code" : "70569-9",
"display" : "Plasmodium sp Ag [Identifier] in Blood by Rapid immunoassay"
},
{
"code" : "71429-5",
"display" : "Campylobacter sp DNA.diarrheagenic [Presence] in Stool by NAA with probe detection"
},
{
"code" : "74037-3",
"display" : "Transmissible spongiform encephalopathy [Identifier] in Brain by Light microscopy"
},
{
"code" : "75756-7",
"display" : "Bacteria identified in Isolate by MS.MALDI-TOF"
},
{
"code" : "7899-8",
"display" : "Hantavirus RNA [Presence] in Serum by NAA with probe detection"
},
{
"code" : "82300-5",
"display" : "Shigella sp [Presence] in Stool by Culture"
},
{
"code" : "82301-3",
"display" : "Salmonella sp [Presence] in Stool by Culture"
},
{
"code" : "85827-4",
"display" : "Carbapenem resistance bla OXA-48-like gene [Presence] by Molecular method"
},
{
"code" : "86520-4",
"display" : "Hantavirus RNA [Presence] in Blood by NAA with probe detection"
},
{
"code" : "88585-5",
"display" : "Legionella sp identified in Lower respiratory specimen by Organism specific culture"
},
{
"code" : "88588-9",
"display" : "Legionella sp DNA [Identifier] in Lower respiratory specimen by NAA with probe detection"
},
{
"code" : "90066-2",
"display" : "Corynebacterium sp identified in Isolate by Organism specific culture"
},
{
"code" : "92786-3",
"display" : "Corynebacterium sp DNA [Presence] by NAA with probe detection in Positive blood culture"
},
{
"code" : "93385-3",
"display" : "Salmonella sp DNA [Presence] by NAA with probe detection in Positive blood culture"
},
{
"code" : "97313-1",
"display" : "Salmonella sp DNA [Presence] in Stool by NAA with probe detection"
},
{
"code" : "97513-6",
"display" : "Campylobacter sp [Presence] in Specimen by Organism specific culture"
}
]
}
]
}
}