ch-elm-expecting-organism-specification
type: ValueSet
node role: treeRoot
resource.id:
  value: ch-elm-expecting-organism-specification
domain resource.text:
  narrative.status:
    value: generated
  narrative.div: Generated Narrative: ValueSet ch-elm-expecting-organism-specification Include these codes as defined in http://loinc.org version Not Stated (use latest from terminology server) Code Display CH ELM Expecting Organism Specification To Results Completion Vs 100911-7 Campylobacter sp [Presence] in Stool by Organism specific culture ?http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-camp-org 101003-2 Monkeypox virus clade [Type] in Specimen by Sequencing ?http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-mpox-org 101219-4 Legionella sp DNA [Presence] in Specimen by NAA with probe detection ?http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-leg-org 104376-9 Diphtheria toxin DNA [Presence] in Specimen by NAA with probe detection ?http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-diph-org 14357-8 Microscopic observation [Identifier] in Cerebral spinal fluid by Gram stain ?http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-men-org 17563-8 Salmonella sp identified in Specimen by Organism specific culture ?http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-sal-org 17576-0 Shigella sp identified in Specimen by Organism specific culture ?http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-shi-nent-org 22826-2 Influenza virus A identified in Specimen by Bioassay ?http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-influenza-hxny-org 24102-6 Corynebacterium toxin [Presence] in Specimen by Immune diffusion (ID) ?http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-diph-org 32781-7 Legionella sp Ag [Presence] in Urine ?http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-leg-org 38353-9 Streptococcus sp identified in Specimen by Organism specific culture ?http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-pneu-org 39025-2 Influenza virus A hemagglutinin cDNA [Identifier] in Specimen by Sequencing ?http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-influenza-hxny-org 41625-5 Brucella sp DNA [Identifier] in Specimen by NAA with probe detection ?http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-bru-org 43389-6 S…
value set.url:
  value: http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-expecting-organism-specification
value set.version:
  value: 1.14.1
value set.name:
  value: ChElmExpectingOrganismSpecification
value set.title:
  value: CH ELM Expecting Organism Specification
value set.status:
  value: active
value set.experimental:
  value: false
value set.date:
  value: 2026-07-01T19:15:23+00:00
value set.publisher:
  value: Federal Office of Public Health FOPH
value set.contact:
  index: 0
  contact detail.name:
    value: Federal Office of Public Health FOPH
  contact detail.telecom:
    index: 0
    contact point.system:
      value: url
    contact point.value:
      value: https://www.bag.admin.ch/bag/en/home/das-bag/kontakt-standort.html
value set.description:
  value: This CH ELM value set includes the leading codes for the laboratory test results, which have to be completed by another code for the expecting organism.
value set.jurisdiction:
  index: 0
  codeable concept.coding:
    index: 0
    coding.system:
      value: urn:iso:std:iso:3166
    coding.code:
      value: CH
value set.copyright:
  value: CC0-1.0
value set.compose:
  value set.compose.include:
    index: 0
    value set.compose.include.system:
      value: http://loinc.org
    value set.compose.include.concept:
      index: 0
      value set.compose.include.concept.code:
        value: 100911-7
      value set.compose.include.concept.display:
        value: Campylobacter sp [Presence] in Stool by Organism specific culture
    value set.compose.include.concept:
      index: 1
      value set.compose.include.concept.code:
        value: 101003-2
      value set.compose.include.concept.display:
        value: Monkeypox virus clade [Type] in Specimen by Sequencing
    value set.compose.include.concept:
      index: 2
      value set.compose.include.concept.code:
        value: 101219-4
      value set.compose.include.concept.display:
        value: Legionella sp DNA [Presence] in Specimen by NAA with probe detection
    value set.compose.include.concept:
      index: 3
      value set.compose.include.concept.code:
        value: 104376-9
      value set.compose.include.concept.display:
        value: Diphtheria toxin DNA [Presence] in Specimen by NAA with probe detection
    value set.compose.include.concept:
      index: 4
      value set.compose.include.concept.code:
        value: 14357-8
      value set.compose.include.concept.display:
        value: Microscopic observation [Identifier] in Cerebral spinal fluid by Gram stain
    value set.compose.include.concept:
      index: 5
      value set.compose.include.concept.code:
        value: 17563-8
      value set.compose.include.concept.display:
        value: Salmonella sp identified in Specimen by Organism specific culture
    value set.compose.include.concept:
      index: 6
      value set.compose.include.concept.code:
        value: 17576-0
      value set.compose.include.concept.display:
        value: Shigella sp identified in Specimen by Organism specific culture
    value set.compose.include.concept:
      index: 7
      value set.compose.include.concept.code:
        value: 22826-2
      value set.compose.include.concept.display:
        value: Influenza virus A identified in Specimen by Bioassay
    value set.compose.include.concept:
      index: 8
      value set.compose.include.concept.code:
        value: 24102-6
      value set.compose.include.concept.display:
        value: Corynebacterium toxin [Presence] in Specimen by Immune diffusion (ID)
    value set.compose.include.concept:
      index: 9
      value set.compose.include.concept.code:
        value: 32781-7
      value set.compose.include.concept.display:
        value: Legionella sp Ag [Presence] in Urine
    value set.compose.include.concept:
      index: 10
      value set.compose.include.concept.code:
        value: 38353-9
      value set.compose.include.concept.display:
        value: Streptococcus sp identified in Specimen by Organism specific culture
    value set.compose.include.concept:
      index: 11
      value set.compose.include.concept.code:
        value: 39025-2
      value set.compose.include.concept.display:
        value: Influenza virus A hemagglutinin cDNA [Identifier] in Specimen by Sequencing
    value set.compose.include.concept:
      index: 12
      value set.compose.include.concept.code:
        value: 41625-5
      value set.compose.include.concept.display:
        value: Brucella sp DNA [Identifier] in Specimen by NAA with probe detection
    value set.compose.include.concept:
      index: 13
      value set.compose.include.concept.code:
        value: 43389-6
      value set.compose.include.concept.display:
        value: Streptococcus sp identified in Isolate by Organism specific culture
    value set.compose.include.concept:
      index: 14
      value set.compose.include.concept.code:
        value: 46454-5
      value set.compose.include.concept.display:
        value: Shigella sp [Presence] in Specimen by Organism specific culture
    value set.compose.include.concept:
      index: 15
      value set.compose.include.concept.code:
        value: 46732-4
      value set.compose.include.concept.display:
        value: Francisella tularensis subtype [Identifier] in Specimen by NAA with probe detection
    value set.compose.include.concept:
      index: 16
      value set.compose.include.concept.code:
        value: 47085-6
      value set.compose.include.concept.display:
        value: Plasmodium sp DNA [Presence] in Blood by NAA with probe detection
    value set.compose.include.concept:
      index: 17
      value set.compose.include.concept.code:
        value: 49612-5
      value set.compose.include.concept.display:
        value: Salmonella sp DNA [Presence] in Specimen by NAA with probe detection
    value set.compose.include.concept:
      index: 18
      value set.compose.include.concept.code:
        value: 50687-3
      value set.compose.include.concept.display:
        value: Plasmodium sp Ag [Presence] in Blood
    value set.compose.include.concept:
      index: 19
      value set.compose.include.concept.code:
        value: 50697-2
      value set.compose.include.concept.display:
        value: Influenza virus A Ag [Identifier] in Isolate
    value set.compose.include.concept:
      index: 20
      value set.compose.include.concept.code:
        value: 51587-4
      value set.compose.include.concept.display:
        value: Plasmodium sp [Presence] in Blood by Light microscopy
    value set.compose.include.concept:
      index: 21
      value set.compose.include.concept.code:
        value: 534-8
      value set.compose.include.concept.display:
        value: Mycobacterium sp identified in Cerebral spinal fluid by Organism specific culture
    value set.compose.include.concept:
      index: 22
      value set.compose.include.concept.code:
        value: 539-7
      value set.compose.include.concept.display:
        value: Mycobacterium sp identified in Sputum by Organism specific culture
    value set.compose.include.concept:
      index: 23
      value set.compose.include.concept.code:
        value: 540-5
      value set.compose.include.concept.display:
        value: Mycobacterium sp identified in Tissue by Organism specific culture
    value set.compose.include.concept:
      index: 24
      value set.compose.include.concept.code:
        value: 541-3
      value set.compose.include.concept.display:
        value: Mycobacterium sp identified in Urine by Organism specific culture
    value set.compose.include.concept:
      index: 25

value: 543-9

value: Mycobacterium sp identified in Specimen by Organism specific culture

index: 26
value set.compose.include.concept.code:
  value: 552-0
value set.compose.include.concept.display:
  value: Brucella sp identified in Specimen by Organism specific culture

index: 27
value set.compose.include.concept.code:
  value: 58473-0
value set.compose.include.concept.display:
  value: Haemophilus influenzae serotype DNA [Identifier] in Specimen by NAA with probe detection

index: 28
value set.compose.include.concept.code:
  value: 589-2
value set.compose.include.concept.display:
  value: Legionella sp identified in Bronchial specimen by Organism specific culture

index: 29
value set.compose.include.concept.code:
  value: 590-0
value set.compose.include.concept.display:
  value: Legionella sp identified in Sputum by Organism specific culture

index: 30
value set.compose.include.concept.code:
  value: 593-4
value set.compose.include.concept.display:
  value: Legionella sp identified in Specimen by Organism specific culture

index: 31
value set.compose.include.concept.code:
  value: 59423-4
value set.compose.include.concept.display:
  value: Influenza virus A hemagglutinin type RNA [Identifier] in Specimen by NAA with probe detection

index: 32
value set.compose.include.concept.code:
  value: 60422-3
value set.compose.include.concept.display:
  value: Measles virus genotype [Identifier] in Specimen by NAA with probe detection

index: 33
value set.compose.include.concept.code:
  value: 65756-9
value set.compose.include.concept.display:
  value: Salmonella sp serovar [Type] in Isolate

index: 34
value set.compose.include.concept.code:
  value: 6578-9
value set.compose.include.concept.display:
  value: Vibrio sp identified in Blood by Organism specific culture

index: 35
value set.compose.include.concept.code:
  value: 6579-7
value set.compose.include.concept.display:
  value: Vibrio sp identified in Stool by Organism specific culture

index: 36
value set.compose.include.concept.code:
  value: 6581-3
value set.compose.include.concept.display:
  value: Vibrio sp identified in Specimen by Organism specific culture

index: 37
value set.compose.include.concept.code:
  value: 6584-7
value set.compose.include.concept.display:
  value: Virus identified in Specimen by Culture

index: 38
value set.compose.include.concept.code:
  value: 6600-1
value set.compose.include.concept.display:
  value: Haemophilus sp identified in Specimen by Organism specific culture

index: 39
value set.compose.include.concept.code:
  value: 6604-3
value set.compose.include.concept.display:
  value: Influenza virus identified in Specimen by Organism specific culture

index: 40
value set.compose.include.concept.code:
  value: 6609-2
value set.compose.include.concept.display:
  value: Listeria sp identified in Specimen by Organism specific culture

index: 41
value set.compose.include.concept.code:
  value: 70569-9
value set.compose.include.concept.display:
  value: Plasmodium sp Ag [Identifier] in Blood by Rapid immunoassay

index: 42
value set.compose.include.concept.code:
  value: 74037-3
value set.compose.include.concept.display:
  value: Transmissible spongiform encephalopathy [Identifier] in Brain by Light microscopy

index: 43
value set.compose.include.concept.code:
  value: 75756-7
value set.compose.include.concept.display:
  value: Bacteria identified in Isolate by MS.MALDI-TOF

index: 44
value set.compose.include.concept.code:
  value: 7899-8
value set.compose.include.concept.display:
  value: Hantavirus RNA [Presence] in Serum by NAA with probe detection

index: 45
value set.compose.include.concept.code:
  value: 82300-5
value set.compose.include.concept.display:
  value: Shigella sp [Presence] in Stool by Culture

index: 46
value set.compose.include.concept.code:
  value: 82301-3
value set.compose.include.concept.display:
  value: Salmonella sp [Presence] in Stool by Culture

index: 47
value set.compose.include.concept.code:
  value: 86520-4
value set.compose.include.concept.display:
  value: Hantavirus RNA [Presence] in Blood by NAA with probe detection

index: 48
value set.compose.include.concept.code:
  value: 88585-5
value set.compose.include.concept.display:
  value: Legionella sp identified in Lower respiratory specimen by Organism specific culture

index: 49
value set.compose.include.concept.code:
  value: 88588-9
value set.compose.include.concept.display:
  value: Legionella sp DNA [Identifier] in Lower respiratory specimen by NAA with probe detection

index: 50
value set.compose.include.concept.code:
  value: 90066-2
value set.compose.include.concept.display:
  value: Corynebacterium sp identified in Isolate by Organism specific culture

index: 51
value set.compose.include.concept.code:
  value: 92786-3
value set.compose.include.concept.display:
  value: Corynebacterium sp DNA [Presence] by NAA with probe detection in Positive blood culture

index: 52
value set.compose.include.concept.code:
  value: 93385-3
value set.compose.include.concept.display:
  value: Salmonella sp DNA [Presence] by NAA with probe detection in Positive blood culture

index: 53
value set.compose.include.concept.code:
  value: 97313-1
value set.compose.include.concept.display:
  value: Salmonella sp DNA [Presence] in Stool by NAA with probe detection

index: 54
value set.compose.include.concept.code:
  value: 97513-6
value set.compose.include.concept.display:
  value: Campylobacter sp [Presence] in Specimen by Organism specific culture

index: 55
value set.compose.include.concept.code:
  value: 9823-6
value set.compose.include.concept.display:
  value: Mycobacterium sp identified in Bronchial specimen by Organism specific culture