Swissnoso Implementation Guide (R4)
1.0.0 - STU 1 Switzerland flag

This page is part of the Swissnoso Implementation Guide (R4) (v1.0.0: STU 1) based on FHIR R4. This is the current published version. For a full list of available versions, see the Directory of published versions

: Germ 1 (14.07.2021) - TTL Representation

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@prefix fhir: <http://hl7.org/fhir/> .
@prefix loinc: <http://loinc.org/rdf#> .
@prefix owl: <http://www.w3.org/2002/07/owl#> .
@prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> .
@prefix sct: <http://snomed.info/id/> .
@prefix xsd: <http://www.w3.org/2001/XMLSchema#> .

# - resource -------------------------------------------------------------------

 a fhir:Observation;
  fhir:nodeRole fhir:treeRoot;
  fhir:Resource.id [ fhir:value "Germ1-20210714-44371210708"];
  fhir:Resource.meta [
     fhir:Meta.profile [
       fhir:value "http://fhir.ch/ig/swissnoso/StructureDefinition/swissnoso-observation-germ";
       fhir:index 0;
       fhir:link <http://fhir.ch/ig/swissnoso/StructureDefinition/swissnoso-observation-germ>     ]
  ];
  fhir:DomainResource.text [
     fhir:Narrative.status [ fhir:value "generated" ];
     fhir:Narrative.div "<div xmlns=\"http://www.w3.org/1999/xhtml\"><p><b>Generated Narrative</b></p><div style=\"display: inline-block; background-color: #d9e0e7; padding: 6px; margin: 4px; border: 1px solid #8da1b4; border-radius: 5px; line-height: 60%\"><p style=\"margin-bottom: 0px\">Resource \"Germ1-20210714-44371210708\" </p><p style=\"margin-bottom: 0px\">Profile: <a href=\"StructureDefinition-swissnoso-observation-germ.html\">Swissnoso Observation Germ</a></p></div><p><b>partOf</b>: <a href=\"Procedure-Microbiology2-20210714-44371210708.html\">Procedure/Microbiology2-20210714-44371210708</a></p><p><b>status</b>: final</p><p><b>code</b>: Bacteria [Presence] in Urine <span style=\"background: LightGoldenRodYellow; margin: 4px; border: 1px solid khaki\"> (<a href=\"https://loinc.org/\">LOINC</a>#87829-8)</span></p><p><b>subject</b>: <a href=\"Patient-GiuliaRossi.html\">Patient/GiuliaRossi</a></p><p><b>encounter</b>: <a href=\"Encounter-Encounter-44371210708.html\">Encounter/Encounter-44371210708</a></p><p><b>effective</b>: 2021-07-14</p><blockquote><p><b>component</b></p><p><b>code</b>: Bacteria identified in Urine by Culture <span style=\"background: LightGoldenRodYellow; margin: 4px; border: 1px solid khaki\"> (<a href=\"https://loinc.org/\">LOINC</a>#630-4)</span></p><p><b>value</b>: Escherichia coli (organism) <span style=\"background: LightGoldenRodYellow; margin: 4px; border: 1px solid khaki\"> (<a href=\"https://browser.ihtsdotools.org/\">SNOMED CT</a>#112283007)</span></p></blockquote><blockquote><p><b>component</b></p><p><b>code</b>: Bacteria [#/volume] in Urine by Automated count <span style=\"background: LightGoldenRodYellow; margin: 4px; border: 1px solid khaki\"> (<a href=\"https://loinc.org/\">LOINC</a>#51480-2)</span></p><p><b>value</b>: &gt;=10E5 CFU/ml <span style=\"background: LightGoldenRodYellow; margin: 4px; border: 1px solid khaki\"> (<a href=\"CodeSystem-swissnoso-bacterial-count-in-urine.html\">Swissnoso Bacterial Count in Urine</a>#2)</span></p></blockquote></div>"
  ];
  fhir:Observation.partOf [
     fhir:index 0;
     fhir:Reference.reference [ fhir:value "Procedure/Microbiology2-20210714-44371210708" ]
  ];
  fhir:Observation.status [ fhir:value "final"];
  fhir:Observation.code [
     fhir:CodeableConcept.coding [
       fhir:index 0;
       a loinc:87829-8;
       fhir:Coding.system [ fhir:value "http://loinc.org" ];
       fhir:Coding.code [ fhir:value "87829-8" ];
       fhir:Coding.display [ fhir:value "Bacteria [Presence] in Urine" ]     ]
  ];
  fhir:Observation.subject [
     fhir:Reference.reference [ fhir:value "Patient/GiuliaRossi" ]
  ];
  fhir:Observation.encounter [
     fhir:Reference.reference [ fhir:value "Encounter/Encounter-44371210708" ]
  ];
  fhir:Observation.effectiveDateTime [ fhir:value "2021-07-14"^^xsd:date];
  fhir:Observation.component [
     fhir:index 0;
     fhir:Observation.component.code [
       fhir:CodeableConcept.coding [
         fhir:index 0;
         a loinc:630-4;
         fhir:Coding.system [ fhir:value "http://loinc.org" ];
         fhir:Coding.code [ fhir:value "630-4" ];
         fhir:Coding.display [ fhir:value "Bacteria identified in Urine by Culture" ]       ]     ];
     fhir:Observation.component.valueCodeableConcept [
       fhir:CodeableConcept.coding [
         fhir:index 0;
         a sct:112283007;
         fhir:Coding.system [ fhir:value "http://snomed.info/sct" ];
         fhir:Coding.code [ fhir:value "112283007" ];
         fhir:Coding.display [ fhir:value "Escherichia coli (organism)" ]       ]     ]
  ], [
     fhir:index 1;
     fhir:Observation.component.code [
       fhir:CodeableConcept.coding [
         fhir:index 0;
         a loinc:51480-2;
         fhir:Coding.system [ fhir:value "http://loinc.org" ];
         fhir:Coding.code [ fhir:value "51480-2" ];
         fhir:Coding.display [ fhir:value "Bacteria [#/volume] in Urine by Automated count" ]       ]     ];
     fhir:Observation.component.valueCodeableConcept [
       fhir:CodeableConcept.coding [
         fhir:index 0;
         fhir:Coding.system [ fhir:value "http://fhir.ch/ig/swissnoso/CodeSystem/swissnoso-bacterial-count-in-urine" ];
         fhir:Coding.code [ fhir:value "2" ];
         fhir:Coding.display [ fhir:value ">=10E5 CFU/ml" ]       ]     ]
  ].

# - ontology header ------------------------------------------------------------

 a owl:Ontology;
  owl:imports fhir:fhir.ttl.