CH ELM (R4)
1.6.0 - release Switzerland flag

This page is part of the Observations of notifiable communicable infectious diseases (v1.6.0: Release) based on FHIR (HL7® FHIR® Standard) R4. This is the current published version in its permanent home (it will always be available at this URL). For a full list of available versions, see the Directory of published versions

ValueSet: CH ELM Expecting Organism Specification

Official URL: http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-expecting-organism-specification Version: 1.6.0
Active as of 2024-10-31 Computable Name: ChElmExpectingOrganismSpecification

Copyright/Legal: CC0-1.0

This CH ELM value set includes the leading codes for the laboratory test results, which have to be completed by another code for the expecting organism.

References

This value set is not used here; it may be used elsewhere (e.g. specifications and/or implementations that use this content)

Logical Definition (CLD)

Generated Narrative: ValueSet ch-elm-expecting-organism-specification

 

Expansion

Generated Narrative: ValueSet

Expansion based on Loinc v2.78

This value set contains 47 concepts

CodeSystemDisplayCH ELM Expecting Organism Specification To Results Completion Vs
  100911-7http://loinc.orgCampylobacter sp [Presence] in Stool by Organism specific culture​?ValueSet-ch-elm-results-completion-vs.html
  101219-4http://loinc.orgLegionella sp DNA [Presence] in Specimen by NAA with probe detection​?ValueSet-ch-elm-results-completion-vs.html
  101427-3http://loinc.orgShigella sp DNA [Presence] in Stool by NAA with probe detection​?ValueSet-ch-elm-results-completion-vs.html
  104376-9http://loinc.orgDiphtheria toxin DNA [Presence] in Specimen by NAA with probe detection​?ValueSet-ch-elm-results-completion-vs.html
  14357-8http://loinc.orgMicroscopic observation [Identifier] in Cerebral spinal fluid by Gram stain​?ValueSet-ch-elm-results-completion-vs.html
  17563-8http://loinc.orgSalmonella sp identified in Specimen by Organism specific culture​?ValueSet-ch-elm-results-completion-vs.html
  24102-6http://loinc.orgCorynebacterium toxin [Presence] in Specimen by Immune diffusion (ID)​?ValueSet-ch-elm-results-completion-vs.html
  32781-7http://loinc.orgLegionella sp Ag [Presence] in Urine​?ValueSet-ch-elm-results-completion-vs.html
  38353-9http://loinc.orgStreptococcus sp identified in Specimen by Organism specific culture​?ValueSet-ch-elm-results-completion-vs.html
  41625-5http://loinc.orgBrucella sp DNA [Identifier] in Specimen by NAA with probe detection​?ValueSet-ch-elm-results-completion-vs.html
  43389-6http://loinc.orgStreptococcus sp identified in Isolate by Organism specific culture​?ValueSet-ch-elm-results-completion-vs.html
  46454-5http://loinc.orgShigella sp [Presence] in Specimen by Organism specific culture​?ValueSet-ch-elm-results-completion-vs.html
  46455-2http://loinc.orgShigella sp DNA [Presence] in Specimen by NAA with probe detection​?ValueSet-ch-elm-results-completion-vs.html
  46732-4http://loinc.orgFrancisella tularensis subtype [Identifier] in Specimen by NAA with probe detection​?ValueSet-ch-elm-results-completion-vs.html
  47085-6http://loinc.orgPlasmodium sp DNA [Presence] in Blood by NAA with probe detection​?ValueSet-ch-elm-results-completion-vs.html
  49612-5http://loinc.orgSalmonella sp DNA [Presence] in Specimen by NAA with probe detection​?ValueSet-ch-elm-results-completion-vs.html
  49614-1http://loinc.orgCampylobacter sp DNA [Identifier] in Specimen by NAA with probe detection​?ValueSet-ch-elm-results-completion-vs.html
  4992-4http://loinc.orgCampylobacter sp rRNA [Presence] in Specimen by Probe​?ValueSet-ch-elm-results-completion-vs.html
  50687-3http://loinc.orgPlasmodium sp Ag [Presence] in Blood​?ValueSet-ch-elm-results-completion-vs.html
  51587-4http://loinc.orgPlasmodium sp [Presence] in Blood by Light microscopy​?ValueSet-ch-elm-results-completion-vs.html
  552-0http://loinc.orgBrucella sp identified in Specimen by Organism specific culture​?ValueSet-ch-elm-results-completion-vs.html
  58473-0http://loinc.orgHaemophilus influenzae serotype DNA [Identifier] in Specimen by NAA with probe detection​?ValueSet-ch-elm-results-completion-vs.html
  589-2http://loinc.orgLegionella sp identified in Bronchial specimen by Organism specific culture​?ValueSet-ch-elm-results-completion-vs.html
  590-0http://loinc.orgLegionella sp identified in Sputum by Organism specific culture​?ValueSet-ch-elm-results-completion-vs.html
  593-4http://loinc.orgLegionella sp identified in Specimen by Organism specific culture​?ValueSet-ch-elm-results-completion-vs.html
  60422-3http://loinc.orgMeasles virus genotype [Identifier] in Specimen by NAA with probe detection​?ValueSet-ch-elm-results-completion-vs.html
  65756-9http://loinc.orgSalmonella sp serovar [Type] in Isolate​?ValueSet-ch-elm-results-completion-vs.html
  6578-9http://loinc.orgVibrio sp identified in Blood by Organism specific culture​?ValueSet-ch-elm-results-completion-vs.html
  6579-7http://loinc.orgVibrio sp identified in Stool by Organism specific culture​?ValueSet-ch-elm-results-completion-vs.html
  6581-3http://loinc.orgVibrio sp identified in Specimen by Organism specific culture​?ValueSet-ch-elm-results-completion-vs.html
  6584-7http://loinc.orgVirus identified in Specimen by Culture​?ValueSet-ch-elm-results-completion-vs.html
  6600-1http://loinc.orgHaemophilus sp identified in Specimen by Organism specific culture​?ValueSet-ch-elm-results-completion-vs.html
  6609-2http://loinc.orgListeria sp identified in Specimen by Organism specific culture​?ValueSet-ch-elm-results-completion-vs.html
  70569-9http://loinc.orgPlasmodium sp Ag [Identifier] in Blood by Rapid immunoassay​?ValueSet-ch-elm-results-completion-vs.html
  71429-5http://loinc.orgCampylobacter sp DNA.diarrheagenic [Presence] in Stool by NAA with probe detection​?ValueSet-ch-elm-results-completion-vs.html
  74037-3http://loinc.orgTransmissible spongiform encephalopathy [Identifier] in Brain by Light microscopy​?ValueSet-ch-elm-results-completion-vs.html
  75756-7http://loinc.orgBacteria identified in Isolate by MS.MALDI-TOF​?ValueSet-ch-elm-results-completion-vs.html
  82300-5http://loinc.orgShigella sp [Presence] in Stool by Culture​?ValueSet-ch-elm-results-completion-vs.html
  82301-3http://loinc.orgSalmonella sp [Presence] in Stool by Culture​?ValueSet-ch-elm-results-completion-vs.html
  85827-4http://loinc.orgCarbapenem resistance bla OXA-48-like gene [Presence] by Molecular method​?ValueSet-ch-elm-results-completion-vs.html
  88585-5http://loinc.orgLegionella sp identified in Lower respiratory specimen by Organism specific culture​?ValueSet-ch-elm-results-completion-vs.html
  88588-9http://loinc.orgLegionella sp DNA [Identifier] in Lower respiratory specimen by NAA with probe detection​?ValueSet-ch-elm-results-completion-vs.html
  90066-2http://loinc.orgCorynebacterium sp identified in Isolate by Organism specific culture​?ValueSet-ch-elm-results-completion-vs.html
  92786-3http://loinc.orgCorynebacterium sp DNA [Presence] by NAA with probe detection in Positive blood culture​?ValueSet-ch-elm-results-completion-vs.html
  93385-3http://loinc.orgSalmonella sp DNA [Presence] by NAA with probe detection in Positive blood culture​?ValueSet-ch-elm-results-completion-vs.html
  97313-1http://loinc.orgSalmonella sp DNA [Presence] in Stool by NAA with probe detection​?ValueSet-ch-elm-results-completion-vs.html
  97513-6http://loinc.orgCampylobacter sp [Presence] in Specimen by Organism specific culture​?ValueSet-ch-elm-results-completion-vs.html

Explanation of the columns that may appear on this page:

Level A few code lists that FHIR defines are hierarchical - each code is assigned a level. In this scheme, some codes are under other codes, and imply that the code they are under also applies
System The source of the definition of the code (when the value set draws in codes defined elsewhere)
Code The code (used as the code in the resource instance)
Display The display (used in the display element of a Coding). If there is no display, implementers should not simply display the code, but map the concept into their application
Definition An explanation of the meaning of the concept
Comments Additional notes about how to use the code