CH ELM (R4)
1.4.0 - release
CH ELM (R4)
1.4.0 - release
This page is part of the Observations of notifiable communicable infectious diseases (v1.4.0: Release) based on FHIR (HL7® FHIR® Standard) R4. This is the current published version in its permanent home (it will always be available at this URL). For a full list of available versions, see the Directory of published versions
| Official URL: http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-expecting-organism-specification | Version: 1.4.0 | |||
| Active as of 2024-08-20 | Computable Name: ChElmExpectingOrganismSpecification | |||
Copyright/Legal: CC0-1.0 |
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This CH ELM value set includes the leading codes for the laboratory test results, which have to be completed by another code for the expecting organism.
References
This value set is not used here; it may be used elsewhere (e.g. specifications and/or implementations that use this content)
Generated Narrative: ValueSet ch-elm-expecting-organism-specification
http://loinc.org| Code | Display | CH ELM Expecting Organism Specification To Results Completion Vs |
| 46732-4 | Francisella tularensis subtype [Identifier] in Specimen by NAA with probe detection | ?http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-tul-org |
| 100911-7 | Campylobacter sp [Presence] in Stool by Organism specific culture | ?http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-camp-org |
| 101219-4 | Legionella sp DNA [Presence] in Specimen by NAA with probe detection | ?http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-leg-org |
| 101427-3 | Shigella sp DNA [Presence] in Stool by NAA with probe detection | ?http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-shi-org |
| 104376-9 | Diphtheria toxin DNA [Presence] in Specimen by NAA with probe detection | ?http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-diph-org |
| 14357-8 | Microscopic observation [Identifier] in Cerebral spinal fluid by Gram stain | ?http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-men-org |
| 24102-6 | Corynebacterium toxin [Presence] in Specimen by Immune diffusion (ID) | ?http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-diph-org |
| 32781-7 | Legionella sp Ag [Presence] in Urine | ?http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-leg-org |
| 38353-9 | Streptococcus sp identified in Specimen by Organism specific culture | ?http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-pneu-org |
| 43389-6 | Streptococcus sp identified in Isolate by Organism specific culture | ?http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-pneu-org |
| 46454-5 | Shigella sp [Presence] in Specimen by Organism specific culture | ?http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-shi-org |
| 46455-2 | Shigella sp DNA [Presence] in Specimen by NAA with probe detection | ?http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-shi-org |
| 47085-6 | Plasmodium sp DNA [Presence] in Blood by NAA with probe detection | ?http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-mal-org |
| 49609-1 | Vibrio sp DNA [Identifier] in Specimen by NAA with probe detection | ?http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-chol-org |
| 49614-1 | Campylobacter sp DNA [Identifier] in Specimen by NAA with probe detection | ?http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-camp-org |
| 4992-4 | Campylobacter sp rRNA [Presence] in Specimen by Probe | ?http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-camp-org |
| 50687-3 | Plasmodium sp Ag [Presence] in Blood | ?http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-mal-org |
| 51587-4 | Plasmodium sp [Presence] in Blood by Light microscopy | ?http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-mal-org |
| 58473-0 | Haemophilus influenzae serotype DNA [Identifier] in Specimen by NAA with probe detection | ?http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-haem-org |
| 589-2 | Legionella sp identified in Bronchial specimen by Organism specific culture | ?http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-leg-org |
| 590-0 | Legionella sp identified in Sputum by Organism specific culture | ?http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-leg-org |
| 593-4 | Legionella sp identified in Specimen by Organism specific culture | ?http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-leg-org |
| 60422-3 | Measles virus genotype [Identifier] in Specimen by NAA with probe detection | ?http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-mea-org |
| 6578-9 | Vibrio sp identified in Blood by Organism specific culture | ?http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-chol-org |
| 6579-7 | Vibrio sp identified in Stool by Organism specific culture | ?http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-chol-org |
| 6581-3 | Vibrio sp identified in Specimen by Organism specific culture | ?http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-chol-org |
| 6584-7 | Virus identified in Specimen by Culture | ?http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-virus-cult-org |
| 6600-1 | Haemophilus sp identified in Specimen by Organism specific culture | ?http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-haem-org |
| 70569-9 | Plasmodium sp Ag [Identifier] in Blood by Rapid immunoassay | ?http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-mal-org |
| 71429-5 | Campylobacter sp DNA.diarrheagenic [Presence] in Stool by NAA with probe detection | ?http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-camp-diar-org |
| 82300-5 | Shigella sp [Presence] in Stool by Culture | ?http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-shi-org |
| 85827-4 | Carbapenem resistance bla OXA-48-like gene [Presence] by Molecular method | ?http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-cpe-org |
| 88585-5 | Legionella sp identified in Lower respiratory specimen by Organism specific culture | ?http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-leg-org |
| 88588-9 | Legionella sp DNA [Identifier] in Lower respiratory specimen by NAA with probe detection | ?http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-leg-org |
| 90066-2 | Corynebacterium sp identified in Isolate by Organism specific culture | ?http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-diph-org |
| 92786-3 | Corynebacterium sp DNA [Presence] by NAA with probe detection in Positive blood culture | ?http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-diph-org |
| 97513-6 | Campylobacter sp [Presence] in Specimen by Organism specific culture | ?http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-camp-org |
Generated Narrative: ValueSet
Expansion based on Loinc v2.77
This value set contains 37 concepts
| Code | System | Display | CH ELM Expecting Organism Specification To Results Completion Vs |
| 46732-4 | http://loinc.org | Francisella tularensis subtype [Identifier] in Specimen by NAA with probe detection | ?http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-tul-org |
| 100911-7 | http://loinc.org | Campylobacter sp [Presence] in Stool by Organism specific culture | ?http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-camp-org |
| 101219-4 | http://loinc.org | Legionella sp DNA [Presence] in Specimen by NAA with probe detection | ?http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-leg-org |
| 101427-3 | http://loinc.org | Shigella sp DNA [Presence] in Stool by NAA with probe detection | ?http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-shi-org |
| 104376-9 | http://loinc.org | Diphtheria toxin DNA [Presence] in Specimen by NAA with probe detection | ?http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-diph-org |
| 14357-8 | http://loinc.org | Microscopic observation [Identifier] in Cerebral spinal fluid by Gram stain | ?http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-men-org |
| 24102-6 | http://loinc.org | Corynebacterium toxin [Presence] in Specimen by Immune diffusion (ID) | ?http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-diph-org |
| 32781-7 | http://loinc.org | Legionella sp Ag [Presence] in Urine | ?http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-leg-org |
| 38353-9 | http://loinc.org | Streptococcus sp identified in Specimen by Organism specific culture | ?http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-pneu-org |
| 43389-6 | http://loinc.org | Streptococcus sp identified in Isolate by Organism specific culture | ?http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-pneu-org |
| 46454-5 | http://loinc.org | Shigella sp [Presence] in Specimen by Organism specific culture | ?http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-shi-org |
| 46455-2 | http://loinc.org | Shigella sp DNA [Presence] in Specimen by NAA with probe detection | ?http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-shi-org |
| 47085-6 | http://loinc.org | Plasmodium sp DNA [Presence] in Blood by NAA with probe detection | ?http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-mal-org |
| 49609-1 | http://loinc.org | Vibrio sp DNA [Identifier] in Specimen by NAA with probe detection | ?http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-chol-org |
| 49614-1 | http://loinc.org | Campylobacter sp DNA [Identifier] in Specimen by NAA with probe detection | ?http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-camp-org |
| 4992-4 | http://loinc.org | Campylobacter sp rRNA [Presence] in Specimen by Probe | ?http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-camp-org |
| 50687-3 | http://loinc.org | Plasmodium sp Ag [Presence] in Blood | ?http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-mal-org |
| 51587-4 | http://loinc.org | Plasmodium sp [Presence] in Blood by Light microscopy | ?http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-mal-org |
| 58473-0 | http://loinc.org | Haemophilus influenzae serotype DNA [Identifier] in Specimen by NAA with probe detection | ?http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-haem-org |
| 589-2 | http://loinc.org | Legionella sp identified in Bronchial specimen by Organism specific culture | ?http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-leg-org |
| 590-0 | http://loinc.org | Legionella sp identified in Sputum by Organism specific culture | ?http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-leg-org |
| 593-4 | http://loinc.org | Legionella sp identified in Specimen by Organism specific culture | ?http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-leg-org |
| 60422-3 | http://loinc.org | Measles virus genotype [Identifier] in Specimen by NAA with probe detection | ?http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-mea-org |
| 6578-9 | http://loinc.org | Vibrio sp identified in Blood by Organism specific culture | ?http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-chol-org |
| 6579-7 | http://loinc.org | Vibrio sp identified in Stool by Organism specific culture | ?http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-chol-org |
| 6581-3 | http://loinc.org | Vibrio sp identified in Specimen by Organism specific culture | ?http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-chol-org |
| 6584-7 | http://loinc.org | Virus identified in Specimen by Culture | ?http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-virus-cult-org |
| 6600-1 | http://loinc.org | Haemophilus sp identified in Specimen by Organism specific culture | ?http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-haem-org |
| 70569-9 | http://loinc.org | Plasmodium sp Ag [Identifier] in Blood by Rapid immunoassay | ?http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-mal-org |
| 71429-5 | http://loinc.org | Campylobacter sp DNA.diarrheagenic [Presence] in Stool by NAA with probe detection | ?http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-camp-diar-org |
| 82300-5 | http://loinc.org | Shigella sp [Presence] in Stool by Culture | ?http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-shi-org |
| 85827-4 | http://loinc.org | Carbapenem resistance bla OXA-48-like gene [Presence] by Molecular method | ?http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-cpe-org |
| 88585-5 | http://loinc.org | Legionella sp identified in Lower respiratory specimen by Organism specific culture | ?http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-leg-org |
| 88588-9 | http://loinc.org | Legionella sp DNA [Identifier] in Lower respiratory specimen by NAA with probe detection | ?http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-leg-org |
| 90066-2 | http://loinc.org | Corynebacterium sp identified in Isolate by Organism specific culture | ?http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-diph-org |
| 92786-3 | http://loinc.org | Corynebacterium sp DNA [Presence] by NAA with probe detection in Positive blood culture | ?http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-diph-org |
| 97513-6 | http://loinc.org | Campylobacter sp [Presence] in Specimen by Organism specific culture | ?http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-camp-org |
Explanation of the columns that may appear on this page:
| Level | A few code lists that FHIR defines are hierarchical - each code is assigned a level. In this scheme, some codes are under other codes, and imply that the code they are under also applies |
| System | The source of the definition of the code (when the value set draws in codes defined elsewhere) |
| Code | The code (used as the code in the resource instance) |
| Display | The display (used in the display element of a Coding). If there is no display, implementers should not simply display the code, but map the concept into their application |
| Definition | An explanation of the meaning of the concept |
| Comments | Additional notes about how to use the code |