CH ELM (R4)
1.4.0 - release
This page is part of the Observations of notifiable communicable infectious diseases (v1.4.0: Release) based on FHIR (HL7® FHIR® Standard) R4. This is the current published version in its permanent home (it will always be available at this URL). For a full list of available versions, see the Directory of published versions
Active as of 2024-08-20 |
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<div xmlns="http://www.w3.org/1999/xhtml"><p class="res-header-id"><b>Generated Narrative: ConceptMap ch-elm-expecting-organism-specification-to-results-completion-vs</b></p><a name="ch-elm-expecting-organism-specification-to-results-completion-vs"> </a><a name="hcch-elm-expecting-organism-specification-to-results-completion-vs"> </a><a name="ch-elm-expecting-organism-specification-to-results-completion-vs-en-US"> </a><p>Mapping from <a href="ValueSet-ch-elm-expecting-organism-specification.html">CH ELM Expecting Organism Specification</a> to <a href="ValueSet-ch-elm-results-completion-vs.html">CH ELM Results Completion Vs</a></p><br/><p><b>Group 1 </b>Mapping from <a href="http://terminology.hl7.org/5.5.0/CodeSystem-v3-loinc.html">Logical Observation Identifiers, Names and Codes (LOINC)</a> to <a href="CodeSystem-ch-elm-results-completion-vs.html">CH ELM Results Completion Vs</a></p><table class="grid"><tr><td><b>Source Code</b></td><td><b>Relationship</b></td><td><b>Target Code</b></td></tr><tr><td>46732-4 (Francisella tularensis subtype [Identifier] in Specimen by NAA with probe detection)</td><td><a href="http://hl7.org/fhir/extensions/5.1.0/CodeSystem-concept-map-equivalence.html#relatedto" title="relatedto">is related to</a></td><td>http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-tul-org</td></tr><tr><td>100911-7 (Campylobacter sp [Presence] in Stool by Organism specific culture)</td><td><a href="http://hl7.org/fhir/extensions/5.1.0/CodeSystem-concept-map-equivalence.html#relatedto" title="relatedto">is related to</a></td><td>http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-camp-org</td></tr><tr><td>101219-4 (Legionella sp DNA [Presence] in Specimen by NAA with probe detection)</td><td><a href="http://hl7.org/fhir/extensions/5.1.0/CodeSystem-concept-map-equivalence.html#relatedto" title="relatedto">is related to</a></td><td>http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-leg-org</td></tr><tr><td>101427-3 (Shigella sp DNA [Presence] in Stool by NAA with probe detection)</td><td><a href="http://hl7.org/fhir/extensions/5.1.0/CodeSystem-concept-map-equivalence.html#relatedto" title="relatedto">is related to</a></td><td>http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-shi-org</td></tr><tr><td>104376-9 (Diphtheria toxin DNA [Presence] in Specimen by NAA with probe detection)</td><td><a href="http://hl7.org/fhir/extensions/5.1.0/CodeSystem-concept-map-equivalence.html#relatedto" title="relatedto">is related to</a></td><td>http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-diph-org</td></tr><tr><td>14357-8 (Microscopic observation [Identifier] in Cerebral spinal fluid by Gram stain)</td><td><a href="http://hl7.org/fhir/extensions/5.1.0/CodeSystem-concept-map-equivalence.html#relatedto" title="relatedto">is related to</a></td><td>http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-men-org</td></tr><tr><td>24102-6 (Corynebacterium toxin [Presence] in Specimen by Immune diffusion (ID))</td><td><a href="http://hl7.org/fhir/extensions/5.1.0/CodeSystem-concept-map-equivalence.html#relatedto" title="relatedto">is related to</a></td><td>http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-diph-org</td></tr><tr><td>32781-7 (Legionella sp Ag [Presence] in Urine)</td><td><a href="http://hl7.org/fhir/extensions/5.1.0/CodeSystem-concept-map-equivalence.html#relatedto" title="relatedto">is related to</a></td><td>http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-leg-org</td></tr><tr><td>38353-9 (Streptococcus sp identified in Specimen by Organism specific culture)</td><td><a href="http://hl7.org/fhir/extensions/5.1.0/CodeSystem-concept-map-equivalence.html#relatedto" title="relatedto">is related to</a></td><td>http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-pneu-org</td></tr><tr><td>43389-6 (Streptococcus sp identified in Isolate by Organism specific culture)</td><td><a href="http://hl7.org/fhir/extensions/5.1.0/CodeSystem-concept-map-equivalence.html#relatedto" title="relatedto">is related to</a></td><td>http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-pneu-org</td></tr><tr><td>46454-5 (Shigella sp [Presence] in Specimen by Organism specific culture)</td><td><a href="http://hl7.org/fhir/extensions/5.1.0/CodeSystem-concept-map-equivalence.html#relatedto" title="relatedto">is related to</a></td><td>http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-shi-org</td></tr><tr><td>46455-2 (Shigella sp DNA [Presence] in Specimen by NAA with probe detection)</td><td><a href="http://hl7.org/fhir/extensions/5.1.0/CodeSystem-concept-map-equivalence.html#relatedto" title="relatedto">is related to</a></td><td>http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-shi-org</td></tr><tr><td>47085-6 (Plasmodium sp DNA [Presence] in Blood by NAA with probe detection)</td><td><a href="http://hl7.org/fhir/extensions/5.1.0/CodeSystem-concept-map-equivalence.html#relatedto" title="relatedto">is related to</a></td><td>http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-mal-org</td></tr><tr><td>49609-1 (Vibrio sp DNA [Identifier] in Specimen by NAA with probe detection)</td><td><a href="http://hl7.org/fhir/extensions/5.1.0/CodeSystem-concept-map-equivalence.html#relatedto" title="relatedto">is related to</a></td><td>http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-chol-org</td></tr><tr><td>49614-1 (Campylobacter sp DNA [Identifier] in Specimen by NAA with probe detection)</td><td><a href="http://hl7.org/fhir/extensions/5.1.0/CodeSystem-concept-map-equivalence.html#relatedto" title="relatedto">is related to</a></td><td>http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-camp-org</td></tr><tr><td>4992-4 (Campylobacter sp rRNA [Presence] in Specimen by Probe)</td><td><a href="http://hl7.org/fhir/extensions/5.1.0/CodeSystem-concept-map-equivalence.html#relatedto" title="relatedto">is related to</a></td><td>http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-camp-org</td></tr><tr><td>50687-3 (Plasmodium sp Ag [Presence] in Blood)</td><td><a href="http://hl7.org/fhir/extensions/5.1.0/CodeSystem-concept-map-equivalence.html#relatedto" title="relatedto">is related to</a></td><td>http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-mal-org</td></tr><tr><td>51587-4 (Plasmodium sp [Presence] in Blood by Light microscopy)</td><td><a href="http://hl7.org/fhir/extensions/5.1.0/CodeSystem-concept-map-equivalence.html#relatedto" title="relatedto">is related to</a></td><td>http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-mal-org</td></tr><tr><td>58473-0 (Haemophilus influenzae serotype DNA [Identifier] in Specimen by NAA with probe detection)</td><td><a href="http://hl7.org/fhir/extensions/5.1.0/CodeSystem-concept-map-equivalence.html#relatedto" title="relatedto">is related to</a></td><td>http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-haem-org</td></tr><tr><td>589-2 (Legionella sp identified in Bronchial specimen by Organism specific culture)</td><td><a href="http://hl7.org/fhir/extensions/5.1.0/CodeSystem-concept-map-equivalence.html#relatedto" title="relatedto">is related to</a></td><td>http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-leg-org</td></tr><tr><td>590-0 (Legionella sp identified in Sputum by Organism specific culture)</td><td><a href="http://hl7.org/fhir/extensions/5.1.0/CodeSystem-concept-map-equivalence.html#relatedto" title="relatedto">is related to</a></td><td>http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-leg-org</td></tr><tr><td>593-4 (Legionella sp identified in Specimen by Organism specific culture)</td><td><a href="http://hl7.org/fhir/extensions/5.1.0/CodeSystem-concept-map-equivalence.html#relatedto" title="relatedto">is related to</a></td><td>http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-leg-org</td></tr><tr><td>60422-3 (Measles virus genotype [Identifier] in Specimen by NAA with probe detection)</td><td><a href="http://hl7.org/fhir/extensions/5.1.0/CodeSystem-concept-map-equivalence.html#relatedto" title="relatedto">is related to</a></td><td>http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-mea-org</td></tr><tr><td>6578-9 (Vibrio sp identified in Blood by Organism specific culture)</td><td><a href="http://hl7.org/fhir/extensions/5.1.0/CodeSystem-concept-map-equivalence.html#relatedto" title="relatedto">is related to</a></td><td>http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-chol-org</td></tr><tr><td>6579-7 (Vibrio sp identified in Stool by Organism specific culture)</td><td><a href="http://hl7.org/fhir/extensions/5.1.0/CodeSystem-concept-map-equivalence.html#relatedto" title="relatedto">is related to</a></td><td>http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-chol-org</td></tr><tr><td>6581-3 (Vibrio sp identified in Specimen by Organism specific culture)</td><td><a href="http://hl7.org/fhir/extensions/5.1.0/CodeSystem-concept-map-equivalence.html#relatedto" title="relatedto">is related to</a></td><td>http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-chol-org</td></tr><tr><td>6584-7 (Virus identified in Specimen by Culture)</td><td><a href="http://hl7.org/fhir/extensions/5.1.0/CodeSystem-concept-map-equivalence.html#relatedto" title="relatedto">is related to</a></td><td>http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-virus-cult-org</td></tr><tr><td>6600-1 (Haemophilus sp identified in Specimen by Organism specific culture)</td><td><a href="http://hl7.org/fhir/extensions/5.1.0/CodeSystem-concept-map-equivalence.html#relatedto" title="relatedto">is related to</a></td><td>http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-haem-org</td></tr><tr><td>70569-9 (Plasmodium sp Ag [Identifier] in Blood by Rapid immunoassay)</td><td><a href="http://hl7.org/fhir/extensions/5.1.0/CodeSystem-concept-map-equivalence.html#relatedto" title="relatedto">is related to</a></td><td>http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-mal-org</td></tr><tr><td>71429-5 (Campylobacter sp DNA.diarrheagenic [Presence] in Stool by NAA with probe detection)</td><td><a href="http://hl7.org/fhir/extensions/5.1.0/CodeSystem-concept-map-equivalence.html#relatedto" title="relatedto">is related to</a></td><td>http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-camp-diar-org</td></tr><tr><td>82300-5 (Shigella sp [Presence] in Stool by Culture)</td><td><a href="http://hl7.org/fhir/extensions/5.1.0/CodeSystem-concept-map-equivalence.html#relatedto" title="relatedto">is related to</a></td><td>http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-shi-org</td></tr><tr><td>85827-4 (Carbapenem resistance bla OXA-48-like gene [Presence] by Molecular method)</td><td><a href="http://hl7.org/fhir/extensions/5.1.0/CodeSystem-concept-map-equivalence.html#relatedto" title="relatedto">is related to</a></td><td>http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-cpe-org</td></tr><tr><td>88585-5 (Legionella sp identified in Lower respiratory specimen by Organism specific culture)</td><td><a href="http://hl7.org/fhir/extensions/5.1.0/CodeSystem-concept-map-equivalence.html#relatedto" title="relatedto">is related to</a></td><td>http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-leg-org</td></tr><tr><td>88588-9 (Legionella sp DNA [Identifier] in Lower respiratory specimen by NAA with probe detection)</td><td><a href="http://hl7.org/fhir/extensions/5.1.0/CodeSystem-concept-map-equivalence.html#relatedto" title="relatedto">is related to</a></td><td>http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-leg-org</td></tr><tr><td>90066-2 (Corynebacterium sp identified in Isolate by Organism specific culture)</td><td><a href="http://hl7.org/fhir/extensions/5.1.0/CodeSystem-concept-map-equivalence.html#relatedto" title="relatedto">is related to</a></td><td>http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-diph-org</td></tr><tr><td>92786-3 (Corynebacterium sp DNA [Presence] by NAA with probe detection in Positive blood culture)</td><td><a href="http://hl7.org/fhir/extensions/5.1.0/CodeSystem-concept-map-equivalence.html#relatedto" title="relatedto">is related to</a></td><td>http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-diph-org</td></tr><tr><td>97513-6 (Campylobacter sp [Presence] in Specimen by Organism specific culture)</td><td><a href="http://hl7.org/fhir/extensions/5.1.0/CodeSystem-concept-map-equivalence.html#relatedto" title="relatedto">is related to</a></td><td>http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-camp-org</td></tr></table></div>
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value="http://fhir.ch/ig/ch-elm/ConceptMap/ch-elm-expecting-organism-specification-to-results-completion-vs"/>
<version value="1.4.0"/>
<name value="ChElmExpectingOrganismSpecificationToResultsCompletionVs"/>
<title
value="CH ELM Expecting Organism Specification To Results Completion Vs"/>
<status value="active"/>
<experimental value="false"/>
<date value="2024-08-20T16:24:59+00:00"/>
<publisher value="Federal Office of Public Health FOPH"/>
<contact>
<name value="Federal Office of Public Health FOPH"/>
<telecom>
<system value="url"/>
<value
value="https://www.bag.admin.ch/bag/en/home/das-bag/kontakt-standort.html"/>
</telecom>
</contact>
<description
value="This CH ELM concept map shows which leading codes have to be completed by an additional code to specify the organism. The target code shows the URL of the value set containing the permitted codes for the organism specification."/>
<jurisdiction>
<coding>
<system value="urn:iso:std:iso:3166"/>
<code value="CHE"/>
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<copyright value="CC0-1.0"/>
<sourceCanonical
value="http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-expecting-organism-specification"/>
<targetCanonical
value="http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-completion-vs"/>
<group>
<source value="http://loinc.org"/>
<target
value="http://fhir.ch/ig/ch-elm/CodeSystem/ch-elm-results-completion-vs"/>
<element>
<code value="46732-4"/>
<display
value="Francisella tularensis subtype [Identifier] in Specimen by NAA with probe detection"/>
<target>
<modifierExtension
url="http://hl7.org/fhir/1.0/StructureDefinition/extension-ConceptMap.element.target.equivalence">
<valueCode value="relatedto"/>
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<code
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<equivalence value="relatedto"/>
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</element>
<element>
<code value="100911-7"/>
<display
value="Campylobacter sp [Presence] in Stool by Organism specific culture"/>
<target>
<modifierExtension
url="http://hl7.org/fhir/1.0/StructureDefinition/extension-ConceptMap.element.target.equivalence">
<valueCode value="relatedto"/>
</modifierExtension>
<code
value="http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-camp-org"/>
<equivalence value="relatedto"/>
</target>
</element>
<element>
<code value="101219-4"/>
<display
value="Legionella sp DNA [Presence] in Specimen by NAA with probe detection"/>
<target>
<modifierExtension
url="http://hl7.org/fhir/1.0/StructureDefinition/extension-ConceptMap.element.target.equivalence">
<valueCode value="relatedto"/>
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<code
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<equivalence value="relatedto"/>
</target>
</element>
<element>
<code value="101427-3"/>
<display
value="Shigella sp DNA [Presence] in Stool by NAA with probe detection"/>
<target>
<modifierExtension
url="http://hl7.org/fhir/1.0/StructureDefinition/extension-ConceptMap.element.target.equivalence">
<valueCode value="relatedto"/>
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<code
value="http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-shi-org"/>
<equivalence value="relatedto"/>
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<element>
<code value="104376-9"/>
<display
value="Diphtheria toxin DNA [Presence] in Specimen by NAA with probe detection"/>
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<modifierExtension
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<valueCode value="relatedto"/>
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<code
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<equivalence value="relatedto"/>
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<element>
<code value="14357-8"/>
<display
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<modifierExtension
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<valueCode value="relatedto"/>
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<code
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<equivalence value="relatedto"/>
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</element>
<element>
<code value="24102-6"/>
<display
value="Corynebacterium toxin [Presence] in Specimen by Immune diffusion (ID)"/>
<target>
<modifierExtension
url="http://hl7.org/fhir/1.0/StructureDefinition/extension-ConceptMap.element.target.equivalence">
<valueCode value="relatedto"/>
</modifierExtension>
<code
value="http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-diph-org"/>
<equivalence value="relatedto"/>
</target>
</element>
<element>
<code value="32781-7"/>
<display value="Legionella sp Ag [Presence] in Urine"/>
<target>
<modifierExtension
url="http://hl7.org/fhir/1.0/StructureDefinition/extension-ConceptMap.element.target.equivalence">
<valueCode value="relatedto"/>
</modifierExtension>
<code
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<equivalence value="relatedto"/>
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</element>
<element>
<code value="38353-9"/>
<display
value="Streptococcus sp identified in Specimen by Organism specific culture"/>
<target>
<modifierExtension
url="http://hl7.org/fhir/1.0/StructureDefinition/extension-ConceptMap.element.target.equivalence">
<valueCode value="relatedto"/>
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<code
value="http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-pneu-org"/>
<equivalence value="relatedto"/>
</target>
</element>
<element>
<code value="43389-6"/>
<display
value="Streptococcus sp identified in Isolate by Organism specific culture"/>
<target>
<modifierExtension
url="http://hl7.org/fhir/1.0/StructureDefinition/extension-ConceptMap.element.target.equivalence">
<valueCode value="relatedto"/>
</modifierExtension>
<code
value="http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-pneu-org"/>
<equivalence value="relatedto"/>
</target>
</element>
<element>
<code value="46454-5"/>
<display
value="Shigella sp [Presence] in Specimen by Organism specific culture"/>
<target>
<modifierExtension
url="http://hl7.org/fhir/1.0/StructureDefinition/extension-ConceptMap.element.target.equivalence">
<valueCode value="relatedto"/>
</modifierExtension>
<code
value="http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-shi-org"/>
<equivalence value="relatedto"/>
</target>
</element>
<element>
<code value="46455-2"/>
<display
value="Shigella sp DNA [Presence] in Specimen by NAA with probe detection"/>
<target>
<modifierExtension
url="http://hl7.org/fhir/1.0/StructureDefinition/extension-ConceptMap.element.target.equivalence">
<valueCode value="relatedto"/>
</modifierExtension>
<code
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<equivalence value="relatedto"/>
</target>
</element>
<element>
<code value="47085-6"/>
<display
value="Plasmodium sp DNA [Presence] in Blood by NAA with probe detection"/>
<target>
<modifierExtension
url="http://hl7.org/fhir/1.0/StructureDefinition/extension-ConceptMap.element.target.equivalence">
<valueCode value="relatedto"/>
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<code
value="http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-mal-org"/>
<equivalence value="relatedto"/>
</target>
</element>
<element>
<code value="49609-1"/>
<display
value="Vibrio sp DNA [Identifier] in Specimen by NAA with probe detection"/>
<target>
<modifierExtension
url="http://hl7.org/fhir/1.0/StructureDefinition/extension-ConceptMap.element.target.equivalence">
<valueCode value="relatedto"/>
</modifierExtension>
<code
value="http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-chol-org"/>
<equivalence value="relatedto"/>
</target>
</element>
<element>
<code value="49614-1"/>
<display
value="Campylobacter sp DNA [Identifier] in Specimen by NAA with probe detection"/>
<target>
<modifierExtension
url="http://hl7.org/fhir/1.0/StructureDefinition/extension-ConceptMap.element.target.equivalence">
<valueCode value="relatedto"/>
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<code
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<equivalence value="relatedto"/>
</target>
</element>
<element>
<code value="4992-4"/>
<display value="Campylobacter sp rRNA [Presence] in Specimen by Probe"/>
<target>
<modifierExtension
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<valueCode value="relatedto"/>
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<code
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<equivalence value="relatedto"/>
</target>
</element>
<element>
<code value="50687-3"/>
<display value="Plasmodium sp Ag [Presence] in Blood"/>
<target>
<modifierExtension
url="http://hl7.org/fhir/1.0/StructureDefinition/extension-ConceptMap.element.target.equivalence">
<valueCode value="relatedto"/>
</modifierExtension>
<code
value="http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-mal-org"/>
<equivalence value="relatedto"/>
</target>
</element>
<element>
<code value="51587-4"/>
<display value="Plasmodium sp [Presence] in Blood by Light microscopy"/>
<target>
<modifierExtension
url="http://hl7.org/fhir/1.0/StructureDefinition/extension-ConceptMap.element.target.equivalence">
<valueCode value="relatedto"/>
</modifierExtension>
<code
value="http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-mal-org"/>
<equivalence value="relatedto"/>
</target>
</element>
<element>
<code value="58473-0"/>
<display
value="Haemophilus influenzae serotype DNA [Identifier] in Specimen by NAA with probe detection"/>
<target>
<modifierExtension
url="http://hl7.org/fhir/1.0/StructureDefinition/extension-ConceptMap.element.target.equivalence">
<valueCode value="relatedto"/>
</modifierExtension>
<code
value="http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-haem-org"/>
<equivalence value="relatedto"/>
</target>
</element>
<element>
<code value="589-2"/>
<display
value="Legionella sp identified in Bronchial specimen by Organism specific culture"/>
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